Hb_001369_550

Information

Type -
Description -
Location Contig1369: 443805-445825
Sequence    

Annotation

kegg
ID rcu:RCOM_1500030
description 21 kDa protein precursor, putative
nr
ID XP_002510934.1
description 21 kDa protein precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9Q9
description 21 kDa protein, putative OS=Ricinus communis GN=RCOM_1500030 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10197: 443833-444571 , PASA_asmbl_10198: 445414-445515 , PASA_asmbl_10199: 445528-445883
cDNA
(Sanger)
(ID:Location)		 005_F01.ab1: 443833-444540 , 024_M10.ab1: 443837-444534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_550 0.0 - - 21 kDa protein precursor, putative [Ricinus communis]
2 Hb_080147_070 0.0751395657 - - Rop5 [Hevea brasiliensis]
3 Hb_000205_180 0.0809067674 - - lipoxygenase, putative [Ricinus communis]
4 Hb_006316_090 0.0847807861 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_000260_670 0.0931999548 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
6 Hb_002700_030 0.0947202555 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
7 Hb_001284_070 0.0947922763 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_460 0.0982584362 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
9 Hb_004607_020 0.0997825125 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
10 Hb_000954_040 0.1026447398 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
11 Hb_001310_060 0.1046183189 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_001366_380 0.1048299813 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
13 Hb_000272_010 0.110632307 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
14 Hb_000077_300 0.1108133316 - - PREDICTED: expansin-B3-like [Jatropha curcas]
15 Hb_004316_080 0.1117837416 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
16 Hb_002081_060 0.1121035063 - - cyclin d, putative [Ricinus communis]
17 Hb_001076_010 0.1135908152 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
18 Hb_002217_060 0.1140163677 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
19 Hb_000030_080 0.114384469 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
20 Hb_000358_010 0.1187887561 - - PREDICTED: basic blue protein [Populus euphratica]

Gene co-expression network

sample Hb_001369_550 Hb_001369_550 Hb_080147_070 Hb_080147_070 Hb_001369_550--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_001369_550--Hb_000205_180 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_000260_670 Hb_000260_670 Hb_001369_550--Hb_000260_670 Hb_002700_030 Hb_002700_030 Hb_001369_550--Hb_002700_030 Hb_001284_070 Hb_001284_070 Hb_001369_550--Hb_001284_070 Hb_080147_070--Hb_001284_070 Hb_080147_070--Hb_002700_030 Hb_080147_070--Hb_000260_670 Hb_001310_060 Hb_001310_060 Hb_080147_070--Hb_001310_060 Hb_004607_020 Hb_004607_020 Hb_080147_070--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001310_060 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_000205_180--Hb_002700_030 Hb_000358_010 Hb_000358_010 Hb_006316_090--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_001076_010 Hb_001076_010 Hb_006316_090--Hb_001076_010 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_000260_670--Hb_001366_380 Hb_000260_670--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_001284_070 Hb_002700_030--Hb_002757_010 Hb_002700_030--Hb_001310_060 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_001284_070--Hb_001310_060 Hb_001284_070--Hb_004607_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.252739 0.71983 35.0175 13.1633 0.0833451 0.01749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.0929 4.3937

CAGE analysis