Hb_001076_010

Information

Type transcription factor
Description TF Family: B3
Location Contig1076: 93389-94663
Sequence    

Annotation

kegg
ID rcu:RCOM_1113980
description DNA binding protein, putative
nr
ID XP_002533342.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T523
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1113980 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein at5g58280

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02331: 93360-93532 , PASA_asmbl_02332: 93795-94620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001076_010 0.0 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
2 Hb_002874_010 0.0604281196 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
3 Hb_000358_010 0.0677800428 - - PREDICTED: basic blue protein [Populus euphratica]
4 Hb_006316_090 0.0769088479 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_004631_040 0.0783947178 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
6 Hb_000030_080 0.0804120827 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
7 Hb_000103_460 0.0887396314 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
8 Hb_007044_260 0.0975379649 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
9 Hb_004592_030 0.1016919607 - - unknown [Lotus japonicus]
10 Hb_004197_020 0.1023064946 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
11 Hb_001366_380 0.1047372176 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
12 Hb_000085_360 0.1077166704 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
13 Hb_005306_030 0.1110292011 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
14 Hb_001369_550 0.1135908152 - - 21 kDa protein precursor, putative [Ricinus communis]
15 Hb_000260_670 0.1140724736 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
16 Hb_001769_150 0.1161437065 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
17 Hb_001454_270 0.1164302532 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
18 Hb_119044_040 0.1201279392 - - cyclin B, putative [Ricinus communis]
19 Hb_005276_090 0.1211639099 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_001263_030 0.1213263916 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_001076_010 Hb_001076_010 Hb_002874_010 Hb_002874_010 Hb_001076_010--Hb_002874_010 Hb_000358_010 Hb_000358_010 Hb_001076_010--Hb_000358_010 Hb_006316_090 Hb_006316_090 Hb_001076_010--Hb_006316_090 Hb_004631_040 Hb_004631_040 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_000103_460 Hb_000103_460 Hb_001076_010--Hb_000103_460 Hb_002874_010--Hb_004631_040 Hb_002874_010--Hb_000358_010 Hb_007044_260 Hb_007044_260 Hb_002874_010--Hb_007044_260 Hb_000085_360 Hb_000085_360 Hb_002874_010--Hb_000085_360 Hb_119044_040 Hb_119044_040 Hb_002874_010--Hb_119044_040 Hb_000358_010--Hb_007044_260 Hb_000358_010--Hb_006316_090 Hb_001769_150 Hb_001769_150 Hb_000358_010--Hb_001769_150 Hb_000358_010--Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_004631_040--Hb_119044_040 Hb_004631_040--Hb_000085_360 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_001279_110 Hb_001279_110 Hb_004631_040--Hb_001279_110 Hb_003902_070 Hb_003902_070 Hb_000030_080--Hb_003902_070 Hb_000030_080--Hb_004592_030 Hb_001263_030 Hb_001263_030 Hb_000030_080--Hb_001263_030 Hb_001454_270 Hb_001454_270 Hb_000030_080--Hb_001454_270 Hb_000030_080--Hb_004197_020 Hb_000103_460--Hb_001369_550 Hb_000103_460--Hb_002874_010 Hb_005306_030 Hb_005306_030 Hb_000103_460--Hb_005306_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0486117 2.42022 0.992211 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.573097 0.10539

CAGE analysis