Hb_004316_080

Information

Type -
Description -
Location Contig4316: 50701-60492
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02350g
description hypothetical protein
nr
ID XP_010264127.1
description PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
swissprot
ID P32110
description Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1
trembl
ID U5FMK1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s02350g PE=3 SV=1
Gene Ontology
ID GO:0016740
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42276: 59081-91885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_080 0.0 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
2 Hb_006316_090 0.095717033 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_004607_020 0.1022367589 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
4 Hb_001649_050 0.1083375988 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
5 Hb_007951_020 0.1088981135 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
6 Hb_005743_010 0.1094626574 - - RING/U-box superfamily protein, putative [Theobroma cacao]
7 Hb_001476_030 0.1107125166 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_001369_550 0.1117837416 - - 21 kDa protein precursor, putative [Ricinus communis]
9 Hb_000103_460 0.1127917178 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
10 Hb_068804_070 0.1198902052 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
11 Hb_001284_070 0.1202888589 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000205_180 0.1236034499 - - lipoxygenase, putative [Ricinus communis]
13 Hb_001366_380 0.1250036447 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
14 Hb_080147_070 0.1265080264 - - Rop5 [Hevea brasiliensis]
15 Hb_000343_010 0.1272089745 - - F3F9.11 [Arabidopsis thaliana]
16 Hb_001159_220 0.1301050562 - - ESC, putative [Ricinus communis]
17 Hb_005306_030 0.1306480993 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
18 Hb_003626_020 0.1351357887 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_011849_030 0.1361652051 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000358_010 0.1377828444 - - PREDICTED: basic blue protein [Populus euphratica]

Gene co-expression network

sample Hb_004316_080 Hb_004316_080 Hb_006316_090 Hb_006316_090 Hb_004316_080--Hb_006316_090 Hb_004607_020 Hb_004607_020 Hb_004316_080--Hb_004607_020 Hb_001649_050 Hb_001649_050 Hb_004316_080--Hb_001649_050 Hb_007951_020 Hb_007951_020 Hb_004316_080--Hb_007951_020 Hb_005743_010 Hb_005743_010 Hb_004316_080--Hb_005743_010 Hb_001476_030 Hb_001476_030 Hb_004316_080--Hb_001476_030 Hb_000358_010 Hb_000358_010 Hb_006316_090--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_001076_010 Hb_001076_010 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_001366_380 Hb_001366_380 Hb_006316_090--Hb_001366_380 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550 Hb_005306_030 Hb_005306_030 Hb_001649_050--Hb_005306_030 Hb_011849_030 Hb_011849_030 Hb_001649_050--Hb_011849_030 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_001649_050--Hb_000260_670 Hb_000035_150 Hb_000035_150 Hb_007951_020--Hb_000035_150 Hb_007643_060 Hb_007643_060 Hb_007951_020--Hb_007643_060 Hb_007951_020--Hb_003626_020 Hb_012691_010 Hb_012691_010 Hb_007951_020--Hb_012691_010 Hb_007951_020--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007951_020--Hb_000343_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_005743_010--Hb_006266_010 Hb_068804_070 Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_006615_220 Hb_006615_220 Hb_005743_010--Hb_006615_220 Hb_005743_010--Hb_007643_060 Hb_001476_030--Hb_007951_020 Hb_001476_030--Hb_006316_090 Hb_001476_030--Hb_000358_010 Hb_001476_030--Hb_000103_460 Hb_001769_150 Hb_001769_150 Hb_001476_030--Hb_001769_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130458 0.187775 2.89657 0.687539 0 0.010177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.928464 0.277842

CAGE analysis