Hb_001284_070

Information

Type -
Description -
Location Contig1284: 138550-142631
Sequence    

Annotation

kegg
ID rcu:RCOM_0803020
description hypothetical protein
nr
ID XP_002516571.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfite exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08707: 138487-142681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001284_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001310_060 0.0550985753 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_080147_070 0.0650785725 - - Rop5 [Hevea brasiliensis]
4 Hb_004607_020 0.0782373976 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
5 Hb_002700_030 0.07960312 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
6 Hb_000205_180 0.0819225697 - - lipoxygenase, putative [Ricinus communis]
7 Hb_001369_550 0.0947922763 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_002217_060 0.0997647302 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
9 Hb_000077_300 0.1031759471 - - PREDICTED: expansin-B3-like [Jatropha curcas]
10 Hb_005743_010 0.1039811963 - - RING/U-box superfamily protein, putative [Theobroma cacao]
11 Hb_003626_020 0.1044530545 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
12 Hb_000359_180 0.1083312004 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_670 0.1100380636 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
14 Hb_000941_010 0.1134820703 - - hypothetical protein RCOM_0504460 [Ricinus communis]
15 Hb_002757_010 0.1175406139 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
16 Hb_004316_080 0.1202888589 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
17 Hb_000954_040 0.1211847532 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
18 Hb_000343_010 0.1216641773 - - F3F9.11 [Arabidopsis thaliana]
19 Hb_004832_010 0.1275383342 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003592_060 0.1293919759 - - hypothetical protein F383_11017 [Gossypium arboreum]

Gene co-expression network

sample Hb_001284_070 Hb_001284_070 Hb_001310_060 Hb_001310_060 Hb_001284_070--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_001284_070--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001284_070--Hb_004607_020 Hb_002700_030 Hb_002700_030 Hb_001284_070--Hb_002700_030 Hb_000205_180 Hb_000205_180 Hb_001284_070--Hb_000205_180 Hb_001369_550 Hb_001369_550 Hb_001284_070--Hb_001369_550 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_000205_180 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_080147_070--Hb_002700_030 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_080147_070--Hb_001369_550 Hb_080147_070--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550 Hb_002700_030--Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_002700_030--Hb_002757_010 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_002757_010 Hb_000205_180--Hb_002700_030 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27909 20.6597 8.63259 0 0.00872658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0310685 6.87823 4.01716

CAGE analysis