Hb_000205_180

Information

Type -
Description -
Location Contig205: 259857-263692
Sequence    

Annotation

kegg
ID rcu:RCOM_0609750
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002521992.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID Q43191
description Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1
trembl
ID B9S7M3
description Lipoxygenase OS=Ricinus communis GN=RCOM_0609750 PE=3 SV=1
Gene Ontology
ID GO:0016702
description probable linoleate 9s-lipoxygenase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21118: 259907-263695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_180 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_003626_020 0.0805341313 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
3 Hb_001369_550 0.0809067674 - - 21 kDa protein precursor, putative [Ricinus communis]
4 Hb_001310_060 0.0814221919 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
5 Hb_001284_070 0.0819225697 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002757_010 0.0866008272 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
7 Hb_002700_030 0.0930115142 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_000077_300 0.0982552446 - - PREDICTED: expansin-B3-like [Jatropha curcas]
9 Hb_002081_060 0.1015185588 - - cyclin d, putative [Ricinus communis]
10 Hb_004607_020 0.1018167202 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
11 Hb_080147_070 0.1027347786 - - Rop5 [Hevea brasiliensis]
12 Hb_000343_010 0.1119907201 - - F3F9.11 [Arabidopsis thaliana]
13 Hb_006316_090 0.1133578744 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_020273_010 0.1133594972 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
15 Hb_000954_040 0.1160170028 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
16 Hb_002217_060 0.1199366221 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
17 Hb_000103_460 0.1202292719 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
18 Hb_004316_080 0.1236034499 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
19 Hb_005743_010 0.1257692418 - - RING/U-box superfamily protein, putative [Theobroma cacao]
20 Hb_007951_020 0.1272032633 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000205_180 Hb_000205_180 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_001369_550 Hb_001369_550 Hb_000205_180--Hb_001369_550 Hb_001310_060 Hb_001310_060 Hb_000205_180--Hb_001310_060 Hb_001284_070 Hb_001284_070 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000205_180--Hb_002700_030 Hb_003992_130 Hb_003992_130 Hb_003626_020--Hb_003992_130 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_000035_150 Hb_000035_150 Hb_003626_020--Hb_000035_150 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_003626_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_001369_550--Hb_080147_070 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_000260_670 Hb_000260_670 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030 Hb_001369_550--Hb_001284_070 Hb_001310_060--Hb_001284_070 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_001284_070--Hb_080147_070 Hb_001284_070--Hb_004607_020 Hb_001284_070--Hb_002700_030 Hb_002757_010--Hb_000077_300 Hb_002757_010--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_002757_010--Hb_003902_070 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_005116_120 Hb_005116_120 Hb_002757_010--Hb_005116_120 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_080147_070 Hb_002700_030--Hb_003902_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015113 0.830151 34.9687 10.7939 0.0194034 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153201 0 0.0230411 8.466 6.06449

CAGE analysis