Hb_004592_030

Information

Type -
Description -
Location Contig4592: 43718-45004
Sequence    

Annotation

kegg
ID tcc:TCM_042282
description Expansin A8, ALPHA 1.11,EXPA8
nr
ID AFK41150.1
description unknown [Lotus japonicus]
swissprot
ID O22874
description Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1
trembl
ID I3SLK8
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005576
description expansin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43587: 43731-45058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004592_030 0.0 - - unknown [Lotus japonicus]
2 Hb_004197_020 0.0326577915 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
3 Hb_004631_040 0.0650297487 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_003902_070 0.0740717883 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000030_080 0.0751627185 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
6 Hb_000480_060 0.0804254325 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
7 Hb_000085_360 0.0838399198 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_001279_110 0.0840415542 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
9 Hb_000060_030 0.0911262816 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
10 Hb_119044_040 0.0952532421 - - cyclin B, putative [Ricinus communis]
11 Hb_000116_050 0.0959858981 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
12 Hb_000176_040 0.0961953156 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
13 Hb_001454_270 0.0966109233 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
14 Hb_006588_100 0.0985429463 - - conserved hypothetical protein [Ricinus communis]
15 Hb_181744_010 0.0993900018 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_005276_090 0.1013734291 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
17 Hb_001076_010 0.1016919607 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
18 Hb_009113_060 0.1057905125 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001998_180 0.1067754114 - - actin binding protein, putative [Ricinus communis]
20 Hb_000345_450 0.1090792306 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]

Gene co-expression network

sample Hb_004592_030 Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004592_030--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_004592_030--Hb_004631_040 Hb_003902_070 Hb_003902_070 Hb_004592_030--Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_004592_030--Hb_000030_080 Hb_000480_060 Hb_000480_060 Hb_004592_030--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_004592_030--Hb_000085_360 Hb_004197_020--Hb_004631_040 Hb_000176_040 Hb_000176_040 Hb_004197_020--Hb_000176_040 Hb_004197_020--Hb_000030_080 Hb_004197_020--Hb_003902_070 Hb_004197_020--Hb_000480_060 Hb_119044_040 Hb_119044_040 Hb_004631_040--Hb_119044_040 Hb_004631_040--Hb_000085_360 Hb_001279_110 Hb_001279_110 Hb_004631_040--Hb_001279_110 Hb_002874_010 Hb_002874_010 Hb_004631_040--Hb_002874_010 Hb_003902_070--Hb_000030_080 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_000077_300 Hb_000077_300 Hb_003902_070--Hb_000077_300 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270 Hb_002757_010 Hb_002757_010 Hb_003902_070--Hb_002757_010 Hb_001263_030 Hb_001263_030 Hb_000030_080--Hb_001263_030 Hb_000030_080--Hb_001454_270 Hb_001076_010 Hb_001076_010 Hb_000030_080--Hb_001076_010 Hb_001307_150 Hb_001307_150 Hb_000480_060--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_001699_270 Hb_001699_270 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000345_450 Hb_000345_450 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360 Hb_000085_360--Hb_119044_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0664072 29.0957 14.6714 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.45866 1.97494

CAGE analysis