Hb_000176_040

Information

Type transcription factor
Description TF Family: SET
Location Contig176: 57438-69091
Sequence    

Annotation

kegg
ID rcu:RCOM_1404710
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012071581.1
description PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
swissprot
ID Q949T8
description Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1
trembl
ID B9SQW4
description Histone-lysine N-methyltransferase OS=Ricinus communis GN=RCOM_1404710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase ashr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16854: 57521-57645 , PASA_asmbl_16855: 59252-67585 , PASA_asmbl_16856: 59156-61348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_040 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
2 Hb_003368_070 0.0715706263 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
3 Hb_004197_020 0.0846799814 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
4 Hb_004631_040 0.0864741504 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_004592_030 0.0961953156 - - unknown [Lotus japonicus]
6 Hb_074674_010 0.0978551957 - - Cell division cycle protein cdt2, putative [Ricinus communis]
7 Hb_001384_030 0.0987775915 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
8 Hb_061361_010 0.1020969693 - - kinase, putative [Ricinus communis]
9 Hb_119044_040 0.1035433702 - - cyclin B, putative [Ricinus communis]
10 Hb_001205_280 0.1042122688 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
11 Hb_000480_060 0.1043902428 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
12 Hb_023386_070 0.1043988211 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
13 Hb_001699_070 0.1046131231 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000025_770 0.1047509336 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
15 Hb_000035_190 0.1075127055 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001279_110 0.1098358784 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
17 Hb_000085_360 0.1123323087 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
18 Hb_080952_060 0.1145548361 - - PREDICTED: patellin-4 [Populus euphratica]
19 Hb_010369_020 0.1167141851 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
20 Hb_006588_100 0.1184008848 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000176_040 Hb_000176_040 Hb_003368_070 Hb_003368_070 Hb_000176_040--Hb_003368_070 Hb_004197_020 Hb_004197_020 Hb_000176_040--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_000176_040--Hb_004631_040 Hb_004592_030 Hb_004592_030 Hb_000176_040--Hb_004592_030 Hb_074674_010 Hb_074674_010 Hb_000176_040--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_000176_040--Hb_001384_030 Hb_001699_070 Hb_001699_070 Hb_003368_070--Hb_001699_070 Hb_000890_140 Hb_000890_140 Hb_003368_070--Hb_000890_140 Hb_002928_150 Hb_002928_150 Hb_003368_070--Hb_002928_150 Hb_001279_110 Hb_001279_110 Hb_003368_070--Hb_001279_110 Hb_119044_040 Hb_119044_040 Hb_003368_070--Hb_119044_040 Hb_004197_020--Hb_004592_030 Hb_004197_020--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_004197_020--Hb_000030_080 Hb_003902_070 Hb_003902_070 Hb_004197_020--Hb_003902_070 Hb_000480_060 Hb_000480_060 Hb_004197_020--Hb_000480_060 Hb_004631_040--Hb_119044_040 Hb_000085_360 Hb_000085_360 Hb_004631_040--Hb_000085_360 Hb_004631_040--Hb_004592_030 Hb_004631_040--Hb_001279_110 Hb_002874_010 Hb_002874_010 Hb_004631_040--Hb_002874_010 Hb_004592_030--Hb_003902_070 Hb_004592_030--Hb_000030_080 Hb_004592_030--Hb_000480_060 Hb_004592_030--Hb_000085_360 Hb_074674_010--Hb_001384_030 Hb_023386_070 Hb_023386_070 Hb_074674_010--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_074674_010--Hb_001205_280 Hb_010369_020 Hb_010369_020 Hb_074674_010--Hb_010369_020 Hb_046204_010 Hb_046204_010 Hb_074674_010--Hb_046204_010 Hb_061361_010 Hb_061361_010 Hb_074674_010--Hb_061361_010 Hb_001384_030--Hb_001205_280 Hb_001384_030--Hb_023386_070 Hb_001384_030--Hb_046204_010 Hb_001384_030--Hb_061361_010 Hb_001384_030--Hb_010369_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170432 0 2.5661 1.27104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.294205 0.0513991

CAGE analysis