Hb_003360_010

Information

Type -
Description -
Location Contig3360: 46494-58521
Sequence    

Annotation

kegg
ID rcu:RCOM_0293150
description Bipolar kinesin KRP-130, putative
nr
ID XP_002530335.1
description Bipolar kinesin KRP-130, putative [Ricinus communis]
swissprot
ID O23826
description 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1
trembl
ID B9SWG6
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0293150 PE=3 SV=1
Gene Ontology
ID GO:0005871
description 125 kda kinesin-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35195: 46601-53375 , PASA_asmbl_35196: 55795-56980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003360_010 0.0 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
2 Hb_024682_030 0.0817926 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
3 Hb_000260_670 0.083983672 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
4 Hb_000431_100 0.0891994846 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
5 Hb_124677_050 0.0907439218 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001524_120 0.0922391803 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
7 Hb_005183_150 0.0956732135 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
8 Hb_080147_070 0.1032804907 - - Rop5 [Hevea brasiliensis]
9 Hb_002284_260 0.1105717862 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
10 Hb_020301_020 0.1112901374 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_002700_030 0.1151280069 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
12 Hb_007632_210 0.1162479251 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
13 Hb_004007_130 0.1168689806 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
14 Hb_000954_040 0.1179264509 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
15 Hb_000592_100 0.1196090201 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_005542_150 0.1198338074 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
17 Hb_000272_010 0.1225002243 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
18 Hb_001263_030 0.1225350449 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
19 Hb_003106_090 0.1258981666 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
20 Hb_000535_040 0.1273246822 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]

Gene co-expression network

sample Hb_003360_010 Hb_003360_010 Hb_024682_030 Hb_024682_030 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_124677_050 Hb_124677_050 Hb_003360_010--Hb_124677_050 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_003360_010--Hb_005183_150 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_024682_030--Hb_000431_100 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100 Hb_080147_070 Hb_080147_070 Hb_000260_670--Hb_080147_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_000272_010 Hb_000272_010 Hb_000260_670--Hb_000272_010 Hb_001366_380 Hb_001366_380 Hb_000260_670--Hb_001366_380 Hb_002700_030 Hb_002700_030 Hb_000260_670--Hb_002700_030 Hb_000431_100--Hb_001524_120 Hb_002276_250 Hb_002276_250 Hb_000431_100--Hb_002276_250 Hb_001348_100 Hb_001348_100 Hb_000431_100--Hb_001348_100 Hb_000046_240 Hb_000046_240 Hb_000431_100--Hb_000046_240 Hb_007632_210 Hb_007632_210 Hb_124677_050--Hb_007632_210 Hb_124677_050--Hb_005183_150 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_002311_090 Hb_002311_090 Hb_124677_050--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_124677_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_001524_120--Hb_005183_150 Hb_001524_120--Hb_003228_050 Hb_005183_150--Hb_007632_210 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00755597 0.275548 3.7406 2.43625 0 0.0448578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0415487 0.0544934 0.0208632 1.17116 0.511974

CAGE analysis