Hb_000046_240

Information

Type -
Description -
Location Contig46: 207387-211919
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20040g
description POPTRDRAFT_657597; hypothetical protein
nr
ID XP_012069420.1
description PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
swissprot
ID Q5R4M2
description Serine/threonine-protein kinase ULK4 OS=Pongo abelii GN=ULK4 PE=2 SV=1
trembl
ID A0A067KV50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02030 PE=4 SV=1
Gene Ontology
ID GO:0009506
description serine threonine-protein kinase ulk4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43624: 205506-207654 , PASA_asmbl_43625: 208623-209460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_240 0.0 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
2 Hb_000431_100 0.1117210824 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
3 Hb_002276_250 0.1206637497 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
4 Hb_024682_030 0.1222824518 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
5 Hb_001782_100 0.1264789461 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_001524_120 0.1316891004 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
7 Hb_010672_010 0.1405705332 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
8 Hb_000152_590 0.1413356113 - - PREDICTED: 21 kDa protein [Jatropha curcas]
9 Hb_003360_010 0.1421973537 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
10 Hb_001348_010 0.1442280223 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
11 Hb_007632_210 0.1447556989 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
12 Hb_005332_030 0.1485943085 - - conserved hypothetical protein [Ricinus communis]
13 Hb_146901_020 0.1513720427 - - -
14 Hb_005183_150 0.1527132076 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_000535_040 0.1537512696 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
16 Hb_000522_160 0.1547556957 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_001322_160 0.1548758021 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
18 Hb_007590_110 0.1557973553 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
19 Hb_129996_010 0.1572968835 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
20 Hb_000028_490 0.1579635602 - - calmodulin-like protein 6a [Populus trichocarpa]

Gene co-expression network

sample Hb_000046_240 Hb_000046_240 Hb_000431_100 Hb_000431_100 Hb_000046_240--Hb_000431_100 Hb_002276_250 Hb_002276_250 Hb_000046_240--Hb_002276_250 Hb_024682_030 Hb_024682_030 Hb_000046_240--Hb_024682_030 Hb_001782_100 Hb_001782_100 Hb_000046_240--Hb_001782_100 Hb_001524_120 Hb_001524_120 Hb_000046_240--Hb_001524_120 Hb_010672_010 Hb_010672_010 Hb_000046_240--Hb_010672_010 Hb_000431_100--Hb_001524_120 Hb_003360_010 Hb_003360_010 Hb_000431_100--Hb_003360_010 Hb_000431_100--Hb_024682_030 Hb_000431_100--Hb_002276_250 Hb_001348_100 Hb_001348_100 Hb_000431_100--Hb_001348_100 Hb_003754_020 Hb_003754_020 Hb_002276_250--Hb_003754_020 Hb_004055_090 Hb_004055_090 Hb_002276_250--Hb_004055_090 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000490_040 Hb_000490_040 Hb_002276_250--Hb_000490_040 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_024682_030--Hb_001782_100 Hb_006351_030 Hb_006351_030 Hb_001782_100--Hb_006351_030 Hb_000152_590 Hb_000152_590 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_001524_120--Hb_003360_010 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_005183_150 Hb_005183_150 Hb_001524_120--Hb_005183_150 Hb_003228_050 Hb_003228_050 Hb_001524_120--Hb_003228_050 Hb_010672_010--Hb_000152_590 Hb_146901_020 Hb_146901_020 Hb_010672_010--Hb_146901_020 Hb_010672_010--Hb_000592_100 Hb_000098_270 Hb_000098_270 Hb_010672_010--Hb_000098_270 Hb_020025_030 Hb_020025_030 Hb_010672_010--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00546392 0.267979 2.31406 2.69647 0.010936 0.0200688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0123828 0.0682126 0.130787 0.977054 0.270969

CAGE analysis