Hb_003754_020

Information

Type -
Description -
Location Contig3754: 32101-32895
Sequence    

Annotation

kegg
ID rcu:RCOM_0741280
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002525499.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9SHN0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0741280 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38337: 31590-32860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003754_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004330_040 0.0713017216 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001473_060 0.0733629745 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
4 Hb_032260_060 0.0763764433 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
5 Hb_004055_090 0.1018399145 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
6 Hb_002276_250 0.1021806891 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
7 Hb_004357_030 0.1032705855 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_000805_270 0.1101261062 - - PREDICTED: expansin-A4 [Gossypium raimondii]
9 Hb_000310_110 0.1156629418 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
10 Hb_000668_050 0.125497177 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_000714_060 0.1258535285 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
12 Hb_007684_010 0.1292807125 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000490_040 0.1294976421 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
14 Hb_000339_050 0.1310977276 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
15 Hb_027556_060 0.136047592 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
16 Hb_003189_010 0.1384688392 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
17 Hb_093218_010 0.1402352557 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
18 Hb_001777_010 0.1431143046 - - -
19 Hb_000506_050 0.1433080077 - - PREDICTED: thymidine kinase [Jatropha curcas]
20 Hb_001348_010 0.1442235912 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003754_020 Hb_003754_020 Hb_004330_040 Hb_004330_040 Hb_003754_020--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_003754_020--Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_003754_020--Hb_032260_060 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_004330_040--Hb_032260_060 Hb_004330_040--Hb_001473_060 Hb_005181_170 Hb_005181_170 Hb_004330_040--Hb_005181_170 Hb_000310_110 Hb_000310_110 Hb_004330_040--Hb_000310_110 Hb_002045_010 Hb_002045_010 Hb_004330_040--Hb_002045_010 Hb_001473_060--Hb_032260_060 Hb_000714_060 Hb_000714_060 Hb_001473_060--Hb_000714_060 Hb_000668_050 Hb_000668_050 Hb_001473_060--Hb_000668_050 Hb_093218_010 Hb_093218_010 Hb_001473_060--Hb_093218_010 Hb_032260_060--Hb_093218_010 Hb_032260_060--Hb_000714_060 Hb_032260_060--Hb_000310_110 Hb_000853_250 Hb_000853_250 Hb_004055_090--Hb_000853_250 Hb_000522_160 Hb_000522_160 Hb_004055_090--Hb_000522_160 Hb_000345_230 Hb_000345_230 Hb_004055_090--Hb_000345_230 Hb_004055_090--Hb_002276_250 Hb_000977_190 Hb_000977_190 Hb_004055_090--Hb_000977_190 Hb_000431_100 Hb_000431_100 Hb_002276_250--Hb_000431_100 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000490_040 Hb_000490_040 Hb_002276_250--Hb_000490_040 Hb_000046_240 Hb_000046_240 Hb_002276_250--Hb_000046_240 Hb_004357_030--Hb_000805_270 Hb_000339_050 Hb_000339_050 Hb_004357_030--Hb_000339_050 Hb_000506_050 Hb_000506_050 Hb_004357_030--Hb_000506_050 Hb_004357_030--Hb_000490_040 Hb_004357_030--Hb_002276_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295713 0.54157 10.8665 17.1888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.91036 3.64964

CAGE analysis