Hb_002276_250

Information

Type -
Description -
Location Contig2276: 242352-248183
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06670g
description POPTRDRAFT_661832; hypothetical protein
nr
ID XP_012080453.1
description PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
swissprot
ID O13046
description WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis GN=wdhd1 PE=1 SV=1
trembl
ID A0A067KHS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11775 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat and hmg-box dna-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23755: 242907-243012 , PASA_asmbl_23756: 243182-243785 , PASA_asmbl_23757: 244539-245510 , PASA_asmbl_23758: 245764-246653 , PASA_asmbl_23759: 246666-247919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_250 0.0 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
2 Hb_003754_020 0.1021806891 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000431_100 0.1037756028 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
4 Hb_004055_090 0.106878526 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
5 Hb_000805_270 0.1157811628 - - PREDICTED: expansin-A4 [Gossypium raimondii]
6 Hb_000490_040 0.1197281091 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
7 Hb_000046_240 0.1206637497 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
8 Hb_004357_030 0.1221383322 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_001473_060 0.1307639999 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
10 Hb_004330_040 0.1317797439 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001348_010 0.1330760473 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
12 Hb_000535_040 0.1333570784 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
13 Hb_000339_050 0.13635143 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
14 Hb_000506_050 0.1398131466 - - PREDICTED: thymidine kinase [Jatropha curcas]
15 Hb_002292_080 0.1403206255 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000310_110 0.1403288524 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
17 Hb_001782_100 0.1405963645 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_001524_120 0.1406524621 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
19 Hb_032260_060 0.1414716383 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
20 Hb_135121_010 0.1451364408 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]

Gene co-expression network

sample Hb_002276_250 Hb_002276_250 Hb_003754_020 Hb_003754_020 Hb_002276_250--Hb_003754_020 Hb_000431_100 Hb_000431_100 Hb_002276_250--Hb_000431_100 Hb_004055_090 Hb_004055_090 Hb_002276_250--Hb_004055_090 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000490_040 Hb_000490_040 Hb_002276_250--Hb_000490_040 Hb_000046_240 Hb_000046_240 Hb_002276_250--Hb_000046_240 Hb_004330_040 Hb_004330_040 Hb_003754_020--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_003754_020--Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_003754_020--Hb_032260_060 Hb_003754_020--Hb_004055_090 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_001524_120 Hb_001524_120 Hb_000431_100--Hb_001524_120 Hb_003360_010 Hb_003360_010 Hb_000431_100--Hb_003360_010 Hb_024682_030 Hb_024682_030 Hb_000431_100--Hb_024682_030 Hb_001348_100 Hb_001348_100 Hb_000431_100--Hb_001348_100 Hb_000431_100--Hb_000046_240 Hb_000853_250 Hb_000853_250 Hb_004055_090--Hb_000853_250 Hb_000522_160 Hb_000522_160 Hb_004055_090--Hb_000522_160 Hb_000345_230 Hb_000345_230 Hb_004055_090--Hb_000345_230 Hb_000977_190 Hb_000977_190 Hb_004055_090--Hb_000977_190 Hb_000339_050 Hb_000339_050 Hb_000805_270--Hb_000339_050 Hb_000805_270--Hb_004357_030 Hb_000506_050 Hb_000506_050 Hb_000805_270--Hb_000506_050 Hb_002304_100 Hb_002304_100 Hb_000805_270--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000805_270--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_000805_270--Hb_000243_340 Hb_006711_040 Hb_006711_040 Hb_000490_040--Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_000490_040--Hb_000343_220 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_000490_040--Hb_004357_030 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_000046_240--Hb_024682_030 Hb_001782_100 Hb_001782_100 Hb_000046_240--Hb_001782_100 Hb_000046_240--Hb_001524_120 Hb_010672_010 Hb_010672_010 Hb_000046_240--Hb_010672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0138677 0.0616934 1.538 2.08362 0 0.00646327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0157287 0.0247542 0.023645 0.844754 0.316434

CAGE analysis