Hb_000431_100

Information

Type -
Description -
Location Contig431: 138605-139594
Sequence    

Annotation

kegg
ID rcu:RCOM_1677000
description ribonucleoside-diphosphate reductase small chain, putative (EC:1.17.4.1)
nr
ID XP_002509510.1
description ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
swissprot
ID P49730
description Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RBH6
description Ribonucleoside-diphosphate reductase small chain, putative OS=Ricinus communis GN=RCOM_1677000 PE=4 SV=1
Gene Ontology
ID GO:0004748
description ribonucleoside-diphosphate reductase small chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_100 0.0 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
2 Hb_001524_120 0.0801752335 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
3 Hb_003360_010 0.0891994846 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
4 Hb_024682_030 0.0965568936 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
5 Hb_002276_250 0.1037756028 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
6 Hb_001348_100 0.1108579111 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
7 Hb_000046_240 0.1117210824 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
8 Hb_000592_100 0.1135565162 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
9 Hb_000522_160 0.1163875659 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
10 Hb_000535_040 0.1222452541 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
11 Hb_002805_180 0.1245982708 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004007_130 0.1253171866 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
13 Hb_007126_010 0.1261233277 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_001782_100 0.1277829998 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000024_150 0.1285716293 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
16 Hb_003935_040 0.1296833443 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
17 Hb_000310_110 0.1304110818 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
18 Hb_159809_040 0.1310334589 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006693_010 0.1311790368 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
20 Hb_007632_210 0.1311999299 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]

Gene co-expression network

sample Hb_000431_100 Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_000431_100--Hb_001524_120 Hb_003360_010 Hb_003360_010 Hb_000431_100--Hb_003360_010 Hb_024682_030 Hb_024682_030 Hb_000431_100--Hb_024682_030 Hb_002276_250 Hb_002276_250 Hb_000431_100--Hb_002276_250 Hb_001348_100 Hb_001348_100 Hb_000431_100--Hb_001348_100 Hb_000046_240 Hb_000046_240 Hb_000431_100--Hb_000046_240 Hb_001524_120--Hb_003360_010 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_005183_150 Hb_005183_150 Hb_001524_120--Hb_005183_150 Hb_001524_120--Hb_024682_030 Hb_003228_050 Hb_003228_050 Hb_001524_120--Hb_003228_050 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_124677_050 Hb_124677_050 Hb_003360_010--Hb_124677_050 Hb_003360_010--Hb_005183_150 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100 Hb_003754_020 Hb_003754_020 Hb_002276_250--Hb_003754_020 Hb_004055_090 Hb_004055_090 Hb_002276_250--Hb_004055_090 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000490_040 Hb_000490_040 Hb_002276_250--Hb_000490_040 Hb_002276_250--Hb_000046_240 Hb_000522_160 Hb_000522_160 Hb_001348_100--Hb_000522_160 Hb_006693_010 Hb_006693_010 Hb_001348_100--Hb_006693_010 Hb_159809_040 Hb_159809_040 Hb_001348_100--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_001348_100--Hb_000538_290 Hb_006810_040 Hb_006810_040 Hb_001348_100--Hb_006810_040 Hb_000297_210 Hb_000297_210 Hb_001348_100--Hb_000297_210 Hb_000046_240--Hb_024682_030 Hb_000046_240--Hb_001782_100 Hb_000046_240--Hb_001524_120 Hb_010672_010 Hb_010672_010 Hb_000046_240--Hb_010672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190494 3.19562 34.4983 32.9392 0.0209975 0.0248327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.769729 0.443948 0.371183 12.6139 6.51785

CAGE analysis