Hb_003813_090

Information

Type -
Description -
Location Contig3813: 59776-64602
Sequence    

Annotation

kegg
ID rcu:RCOM_1055530
description hypothetical protein
nr
ID XP_012077992.1
description PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38627: 59884-60174 , PASA_asmbl_38628: 61529-61939 , PASA_asmbl_38630: 62199-63485 , PASA_asmbl_38631: 62199-63549 , PASA_asmbl_38632: 63970-64587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_090 0.0 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
2 Hb_001524_120 0.0923040002 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
3 Hb_000576_140 0.1146190143 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
4 Hb_006693_010 0.116569636 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
5 Hb_000956_050 0.116719009 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
6 Hb_003228_050 0.1170865581 - - chromomethylase [Hevea brasiliensis]
7 Hb_005675_050 0.1209418123 - - alpha-glucosidase, putative [Ricinus communis]
8 Hb_000522_160 0.1219119904 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_000107_360 0.1252999623 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
10 Hb_010889_010 0.1291917192 - - PREDICTED: myosin-12 [Jatropha curcas]
11 Hb_001348_100 0.1306092139 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
12 Hb_000742_180 0.1310710912 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
13 Hb_002965_160 0.134128922 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_003109_010 0.1349485809 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
15 Hb_000739_170 0.135480139 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
16 Hb_000359_100 0.1362787185 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003666_070 0.1373315818 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
18 Hb_003935_040 0.1376892624 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
19 Hb_003992_280 0.1380693393 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
20 Hb_005183_150 0.1394127606 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_090 Hb_003813_090 Hb_001524_120 Hb_001524_120 Hb_003813_090--Hb_001524_120 Hb_000576_140 Hb_000576_140 Hb_003813_090--Hb_000576_140 Hb_006693_010 Hb_006693_010 Hb_003813_090--Hb_006693_010 Hb_000956_050 Hb_000956_050 Hb_003813_090--Hb_000956_050 Hb_003228_050 Hb_003228_050 Hb_003813_090--Hb_003228_050 Hb_005675_050 Hb_005675_050 Hb_003813_090--Hb_005675_050 Hb_000431_100 Hb_000431_100 Hb_001524_120--Hb_000431_100 Hb_003360_010 Hb_003360_010 Hb_001524_120--Hb_003360_010 Hb_005183_150 Hb_005183_150 Hb_001524_120--Hb_005183_150 Hb_024682_030 Hb_024682_030 Hb_001524_120--Hb_024682_030 Hb_001524_120--Hb_003228_050 Hb_000317_120 Hb_000317_120 Hb_000576_140--Hb_000317_120 Hb_000742_180 Hb_000742_180 Hb_000576_140--Hb_000742_180 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_016898_020 Hb_016898_020 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190 Hb_000522_160 Hb_000522_160 Hb_006693_010--Hb_000522_160 Hb_001971_040 Hb_001971_040 Hb_006693_010--Hb_001971_040 Hb_000020_050 Hb_000020_050 Hb_006693_010--Hb_000020_050 Hb_001348_100 Hb_001348_100 Hb_006693_010--Hb_001348_100 Hb_006810_040 Hb_006810_040 Hb_006693_010--Hb_006810_040 Hb_005332_030 Hb_005332_030 Hb_006693_010--Hb_005332_030 Hb_000190_220 Hb_000190_220 Hb_000956_050--Hb_000190_220 Hb_000956_050--Hb_003228_050 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_002311_090 Hb_002311_090 Hb_000956_050--Hb_002311_090 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_007632_210 Hb_007632_210 Hb_003228_050--Hb_007632_210 Hb_124677_050 Hb_124677_050 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_004122_010 Hb_004122_010 Hb_005675_050--Hb_004122_010 Hb_003666_070 Hb_003666_070 Hb_005675_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_005675_050--Hb_007632_160 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_000418_170 Hb_000418_170 Hb_005675_050--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0306786 0.16296 2.21872 1.82862 0.0340356 0.00511577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.01328 0.0522529 0.0800712 0.323158 0.513587

CAGE analysis