Hb_000190_220

Information

Type -
Description -
Location Contig190: 312978-321010
Sequence    

Annotation

kegg
ID rcu:RCOM_0646080
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012092181.1
description PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
swissprot
ID Q2QMH1
description Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica GN=NEK2 PE=2 SV=1
trembl
ID A0A067JF55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21884 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase nek2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18936: 313011-314650 , PASA_asmbl_18937: 314676-317487 , PASA_asmbl_18938: 317501-320520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_220 0.0 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
2 Hb_000956_050 0.1024621125 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
3 Hb_000139_280 0.1122021708 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
4 Hb_002311_090 0.1156938459 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
5 Hb_010436_080 0.1218019443 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
6 Hb_007943_180 0.1250978367 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
7 Hb_006970_130 0.1258760904 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
8 Hb_004129_060 0.1269542616 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_001501_070 0.127794076 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
10 Hb_004531_080 0.1283448214 - - hypothetical protein RCOM_1491960 [Ricinus communis]
11 Hb_001862_050 0.13098484 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
12 Hb_003020_190 0.138245561 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
13 Hb_004968_040 0.1416335395 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
14 Hb_000175_300 0.1426066325 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
15 Hb_004007_130 0.1427400864 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
16 Hb_003109_010 0.1447060915 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
17 Hb_000567_290 0.1449479634 - - hypothetical protein RCOM_0303940 [Ricinus communis]
18 Hb_003228_050 0.1450811553 - - chromomethylase [Hevea brasiliensis]
19 Hb_005271_140 0.1460878761 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
20 Hb_124677_050 0.1500869961 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000190_220 Hb_000190_220 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_003228_050 Hb_003228_050 Hb_000956_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_000956_050--Hb_002311_090 Hb_003784_040 Hb_003784_040 Hb_000139_280--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_000139_280--Hb_005504_040 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_101133_050 Hb_101133_050 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_002311_090--Hb_000661_150 Hb_000003_060 Hb_000003_060 Hb_010436_080--Hb_000003_060 Hb_004968_040 Hb_004968_040 Hb_010436_080--Hb_004968_040 Hb_002078_230 Hb_002078_230 Hb_010436_080--Hb_002078_230 Hb_009339_040 Hb_009339_040 Hb_010436_080--Hb_009339_040 Hb_010436_080--Hb_006970_130 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_001123_310 Hb_001123_310 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_000120_300 Hb_000120_300 Hb_007943_180--Hb_000120_300 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_006970_130--Hb_004531_080 Hb_006970_130--Hb_004968_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159058 0.588134 6.6516 3.7185 0.148605 0.0658628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.521981 0.392035 0.106071 0.750466 0.984982

CAGE analysis