Hb_009339_040

Information

Type -
Description -
Location Contig9339: 44849-46889
Sequence    

Annotation

kegg
ID rcu:RCOM_1072870
description hypothetical protein
nr
ID XP_002533130.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUC9
description Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1
trembl
ID B9T4G1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1072870 PE=4 SV=1
Gene Ontology
ID GO:0031225
description uncharacterized gpi-anchored protein at4g28100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62925: 44802-47048
cDNA
(Sanger)
(ID:Location)		 030_O24.ab1: 44804-46475 , 033_J02.ab1: 44804-45496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009339_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000343_020 0.1128789029 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
3 Hb_011849_030 0.1268419564 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004007_130 0.1316690638 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
5 Hb_002311_090 0.1397932013 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
6 Hb_027337_010 0.1428554566 - - Potassium transporter, putative [Ricinus communis]
7 Hb_024682_030 0.1429678273 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
8 Hb_001934_040 0.1456665564 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
9 Hb_010436_080 0.1456938626 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
10 Hb_000907_140 0.14692336 - - PREDICTED: annexin D5-like [Jatropha curcas]
11 Hb_002871_130 0.150658592 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
12 Hb_002200_020 0.1509959253 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
13 Hb_000189_350 0.1521254534 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
14 Hb_003360_010 0.1527356084 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
15 Hb_000862_050 0.1533374371 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
16 Hb_001649_050 0.1542705629 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
17 Hb_124677_050 0.1544104699 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006153_010 0.1545872906 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
19 Hb_006060_010 0.1549892417 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
20 Hb_005306_030 0.1556783455 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009339_040 Hb_009339_040 Hb_000343_020 Hb_000343_020 Hb_009339_040--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_009339_040--Hb_011849_030 Hb_004007_130 Hb_004007_130 Hb_009339_040--Hb_004007_130 Hb_002311_090 Hb_002311_090 Hb_009339_040--Hb_002311_090 Hb_027337_010 Hb_027337_010 Hb_009339_040--Hb_027337_010 Hb_024682_030 Hb_024682_030 Hb_009339_040--Hb_024682_030 Hb_002874_120 Hb_002874_120 Hb_000343_020--Hb_002874_120 Hb_002081_060 Hb_002081_060 Hb_000343_020--Hb_002081_060 Hb_004607_020 Hb_004607_020 Hb_000343_020--Hb_004607_020 Hb_000343_020--Hb_011849_030 Hb_033152_060 Hb_033152_060 Hb_000343_020--Hb_033152_060 Hb_001159_220 Hb_001159_220 Hb_011849_030--Hb_001159_220 Hb_001649_050 Hb_001649_050 Hb_011849_030--Hb_001649_050 Hb_005306_030 Hb_005306_030 Hb_011849_030--Hb_005306_030 Hb_011849_030--Hb_004607_020 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_002871_130 Hb_002871_130 Hb_004007_130--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_004531_080 Hb_004531_080 Hb_004007_130--Hb_004531_080 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_004007_130--Hb_024682_030 Hb_101133_050 Hb_101133_050 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_002311_090--Hb_000661_150 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_003626_020 Hb_003626_020 Hb_027337_010--Hb_003626_020 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0849298 1.79928 11.787 5.67059 0.302358 0.0703538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274332 0.107889 0 2.16522 1.10982

CAGE analysis