Hb_006970_130

Information

Type -
Description -
Location Contig6970: 113766-114176
Sequence    

Annotation

kegg
ID ocu:100341225
description H3F3B; H3 histone, family 3B (H3.3B)
nr
ID XP_011791097.1
description PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
swissprot
ID Q06196
description Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2
trembl
ID G1T8H6
description Histone H3 OS=Oryctolagus cuniculus GN=LOC100341225 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_130 0.0 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
2 Hb_005271_140 0.101009666 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
3 Hb_000288_090 0.1164091132 - - unnamed protein product [Vitis vinifera]
4 Hb_004007_130 0.1194033471 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
5 Hb_000190_220 0.1258760904 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
6 Hb_004531_080 0.1293395009 - - hypothetical protein RCOM_1491960 [Ricinus communis]
7 Hb_004968_040 0.1299613566 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
8 Hb_000003_060 0.1303035077 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
9 Hb_093458_020 0.136918313 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
10 Hb_002871_130 0.1385006057 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
11 Hb_000960_090 0.1421639057 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000077_110 0.1433801381 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
13 Hb_000181_270 0.1455199476 - - ATP binding protein, putative [Ricinus communis]
14 Hb_010436_080 0.1476510135 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
15 Hb_000088_240 0.1479565433 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000934_150 0.1545796755 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
17 Hb_003580_010 0.1557757351 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_001123_310 0.1580153303 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
19 Hb_001377_530 0.1582211699 - - NC domain-containing family protein [Populus trichocarpa]
20 Hb_002965_160 0.1599826903 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]

Gene co-expression network

sample Hb_006970_130 Hb_006970_130 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_001232_090 Hb_001232_090 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050 Hb_002871_130 Hb_002871_130 Hb_004007_130--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_004007_130--Hb_004531_080 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_004531_080--Hb_002871_130 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_004531_080--Hb_000483_080 Hb_004968_040--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_004968_040--Hb_000077_110 Hb_093458_020 Hb_093458_020 Hb_004968_040--Hb_093458_020 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_010436_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34527 12.7029 96.948 61.4711 1.39027 1.81565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0311 5.94642 3.83835 24.9081 12.6545

CAGE analysis