Hb_000139_280

Information

Type -
Description -
Location Contig139: 320641-331311
Sequence    

Annotation

kegg
ID rcu:RCOM_0913770
description mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative (EC:1.3.1.74)
nr
ID XP_012069568.1
description PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
swissprot
ID Q40541
description Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum GN=NPK1 PE=1 SV=1
trembl
ID B9RTY0
description Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative OS=Ricinus communis GN=RCOM_0913770 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase npk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10645: 320800-321823 , PASA_asmbl_10647: 329349-330692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_280 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
2 Hb_003784_040 0.1034080546 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
3 Hb_005504_040 0.1050982616 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000190_220 0.1122021708 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
5 Hb_001780_080 0.1249839543 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
6 Hb_000260_040 0.1349767281 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
7 Hb_006275_060 0.1370272637 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
8 Hb_001501_070 0.139863662 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
9 Hb_002307_020 0.1440422745 - - PREDICTED: histone H1-like [Jatropha curcas]
10 Hb_001478_020 0.144701164 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
11 Hb_002007_040 0.1477025283 - - unnamed protein product [Coffea canephora]
12 Hb_038044_010 0.153896088 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_000172_090 0.1545235804 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
14 Hb_010180_030 0.1550809893 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
15 Hb_000684_120 0.1559548936 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
16 Hb_000500_340 0.1575123135 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_001408_170 0.1592445091 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
18 Hb_005271_140 0.1610153898 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
19 Hb_000563_440 0.1619220189 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
20 Hb_006970_130 0.16199975 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]

Gene co-expression network

sample Hb_000139_280 Hb_000139_280 Hb_003784_040 Hb_003784_040 Hb_000139_280--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_000139_280--Hb_005504_040 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_000260_040 Hb_000260_040 Hb_000139_280--Hb_000260_040 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_003784_040--Hb_005504_040 Hb_010180_030 Hb_010180_030 Hb_003784_040--Hb_010180_030 Hb_005725_150 Hb_005725_150 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_005504_040--Hb_010180_030 Hb_005504_040--Hb_001780_080 Hb_005504_040--Hb_006275_060 Hb_005504_040--Hb_005725_150 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_001780_080--Hb_001478_020 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210 Hb_000260_040--Hb_005504_040 Hb_004650_030 Hb_004650_030 Hb_000260_040--Hb_004650_030 Hb_001401_040 Hb_001401_040 Hb_000260_040--Hb_001401_040 Hb_000260_040--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000260_040--Hb_000172_090 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_006275_060--Hb_005725_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121387 0.321889 5.59939 2.60738 0.174325 0.0293496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668953 0.744146 0.275196 0.671665 0.766697

CAGE analysis