Hb_000172_090

Information

Type -
Description -
Location Contig172: 162192-164354
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05700g
description POPTRDRAFT_562623; hypothetical protein
nr
ID XP_012093094.1
description PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16124: 162246-163817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_090 0.0 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
2 Hb_000500_340 0.1444110348 - - PREDICTED: exonuclease 1 [Jatropha curcas]
3 Hb_000139_280 0.1545235804 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
4 Hb_000260_040 0.1551127066 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
5 Hb_003228_050 0.1582135478 - - chromomethylase [Hevea brasiliensis]
6 Hb_007632_210 0.1589872806 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
7 Hb_000155_150 0.1609435689 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
8 Hb_001410_030 0.1617300108 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
9 Hb_002030_130 0.1617579178 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_000567_290 0.1620861528 - - hypothetical protein RCOM_0303940 [Ricinus communis]
11 Hb_006152_040 0.1653697293 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
12 Hb_003055_090 0.1655108314 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
13 Hb_003784_040 0.1665289866 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
14 Hb_001401_040 0.1669943849 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_000190_220 0.1685651807 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
16 Hb_000003_060 0.1715121449 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
17 Hb_005504_040 0.1729537262 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004531_080 0.1745947524 - - hypothetical protein RCOM_1491960 [Ricinus communis]
19 Hb_002311_090 0.1750486633 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
20 Hb_001780_080 0.1762894967 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_000172_090 Hb_000172_090 Hb_000500_340 Hb_000500_340 Hb_000172_090--Hb_000500_340 Hb_000139_280 Hb_000139_280 Hb_000172_090--Hb_000139_280 Hb_000260_040 Hb_000260_040 Hb_000172_090--Hb_000260_040 Hb_003228_050 Hb_003228_050 Hb_000172_090--Hb_003228_050 Hb_007632_210 Hb_007632_210 Hb_000172_090--Hb_007632_210 Hb_000155_150 Hb_000155_150 Hb_000172_090--Hb_000155_150 Hb_124677_050 Hb_124677_050 Hb_000500_340--Hb_124677_050 Hb_004531_080 Hb_004531_080 Hb_000500_340--Hb_004531_080 Hb_000500_340--Hb_007632_210 Hb_000500_340--Hb_003228_050 Hb_001584_360 Hb_001584_360 Hb_000500_340--Hb_001584_360 Hb_005183_150 Hb_005183_150 Hb_000500_340--Hb_005183_150 Hb_003784_040 Hb_003784_040 Hb_000139_280--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_000139_280--Hb_005504_040 Hb_000190_220 Hb_000190_220 Hb_000139_280--Hb_000190_220 Hb_001780_080 Hb_001780_080 Hb_000139_280--Hb_001780_080 Hb_000139_280--Hb_000260_040 Hb_006275_060 Hb_006275_060 Hb_000139_280--Hb_006275_060 Hb_000260_040--Hb_005504_040 Hb_004650_030 Hb_004650_030 Hb_000260_040--Hb_004650_030 Hb_001401_040 Hb_001401_040 Hb_000260_040--Hb_001401_040 Hb_000260_040--Hb_003784_040 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_001524_120 Hb_001524_120 Hb_003228_050--Hb_001524_120 Hb_003228_050--Hb_007632_210 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_007632_210--Hb_005183_150 Hb_007632_210--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_007632_210--Hb_101133_050 Hb_000155_150--Hb_006275_060 Hb_002307_020 Hb_002307_020 Hb_000155_150--Hb_002307_020 Hb_000155_150--Hb_005504_040 Hb_000155_150--Hb_003784_040 Hb_000155_150--Hb_001780_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0938948 0.158505 9.87062 7.42143 0.0156843 0.0160239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17792 1.17936 0.367546 1.86377 0.935056

CAGE analysis