Hb_000155_150

Information

Type -
Description -
Location Contig155: 254161-254571
Sequence    

Annotation

kegg
ID atr:s00030p00044250
description AMTR_s00030p00044250; hypothetical protein
nr
ID XP_006301260.1
description hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
swissprot
ID Q76MV0
description Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1
trembl
ID B8B1H8
description Histone H3 OS=Oryza sativa subsp. indica GN=OsI_21765 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13439: 254058-254644
cDNA
(Sanger)
(ID:Location)		 009_G07.ab1: 254352-254588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_150 0.0 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
2 Hb_006275_060 0.1190852289 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
3 Hb_002307_020 0.1370048143 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_005504_040 0.1448078048 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003784_040 0.1551802296 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
6 Hb_000172_090 0.1609435689 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
7 Hb_001780_080 0.1614011971 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_000139_280 0.1646573216 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
9 Hb_002007_040 0.1653393326 - - unnamed protein product [Coffea canephora]
10 Hb_002979_030 0.1727345826 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
11 Hb_000051_080 0.18690337 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
12 Hb_000260_040 0.1922591951 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
13 Hb_002045_190 0.1940232272 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
14 Hb_005725_150 0.1958447939 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
15 Hb_010180_030 0.203376286 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
16 Hb_000684_120 0.2058248772 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
17 Hb_004162_230 0.212447599 - - PREDICTED: histone H2B [Jatropha curcas]
18 Hb_006152_040 0.2127107516 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
19 Hb_000663_070 0.2132339146 - - cyclin A, putative [Ricinus communis]
20 Hb_000500_340 0.2135576017 - - PREDICTED: exonuclease 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000155_150 Hb_000155_150 Hb_006275_060 Hb_006275_060 Hb_000155_150--Hb_006275_060 Hb_002307_020 Hb_002307_020 Hb_000155_150--Hb_002307_020 Hb_005504_040 Hb_005504_040 Hb_000155_150--Hb_005504_040 Hb_003784_040 Hb_003784_040 Hb_000155_150--Hb_003784_040 Hb_000172_090 Hb_000172_090 Hb_000155_150--Hb_000172_090 Hb_001780_080 Hb_001780_080 Hb_000155_150--Hb_001780_080 Hb_006275_060--Hb_002307_020 Hb_002045_190 Hb_002045_190 Hb_006275_060--Hb_002045_190 Hb_006275_060--Hb_003784_040 Hb_003399_100 Hb_003399_100 Hb_006275_060--Hb_003399_100 Hb_005725_150 Hb_005725_150 Hb_006275_060--Hb_005725_150 Hb_002007_040 Hb_002007_040 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_002307_020--Hb_003784_040 Hb_002307_020--Hb_001780_080 Hb_005504_040--Hb_003784_040 Hb_000139_280 Hb_000139_280 Hb_005504_040--Hb_000139_280 Hb_010180_030 Hb_010180_030 Hb_005504_040--Hb_010180_030 Hb_005504_040--Hb_001780_080 Hb_005504_040--Hb_006275_060 Hb_005504_040--Hb_005725_150 Hb_003784_040--Hb_010180_030 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_000500_340 Hb_000500_340 Hb_000172_090--Hb_000500_340 Hb_000172_090--Hb_000139_280 Hb_000260_040 Hb_000260_040 Hb_000172_090--Hb_000260_040 Hb_003228_050 Hb_003228_050 Hb_000172_090--Hb_003228_050 Hb_007632_210 Hb_007632_210 Hb_000172_090--Hb_007632_210 Hb_001780_080--Hb_001478_020 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159937 0.294481 45.7323 19.8997 0.30711 1.81733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13847 7.28437 1.67928 5.95765 2.63634

CAGE analysis