Hb_002045_190

Information

Type -
Description -
Location Contig2045: 162163-169844
Sequence    

Annotation

kegg
ID gmx:100306323
description uncharacterized LOC100306323
nr
ID XP_012092136.1
description PREDICTED: histone H2A variant 1 [Jatropha curcas]
swissprot
ID O23628
description Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1
trembl
ID A0A067JPB9
description Histone H2A OS=Jatropha curcas GN=JCGZ_21855 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2a variant 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21046: 162151-169831 , PASA_asmbl_21047: 166038-166288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_190 0.0 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
2 Hb_003399_100 0.0997896767 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
3 Hb_006275_060 0.1209985517 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_004116_120 0.1338200411 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
5 Hb_030627_070 0.1354872877 - - histone H4 [Zea mays]
6 Hb_089140_090 0.1479032694 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
7 Hb_033594_040 0.1544466337 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
8 Hb_000563_440 0.1550075569 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
9 Hb_002307_020 0.1629970217 - - PREDICTED: histone H1-like [Jatropha curcas]
10 Hb_000684_120 0.1658680289 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
11 Hb_000139_280 0.1725944393 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
12 Hb_001780_080 0.1757970192 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
13 Hb_004116_100 0.1763579616 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
14 Hb_005375_050 0.1791834765 - - inorganic pyrophosphatase, putative [Ricinus communis]
15 Hb_002027_440 0.1802133876 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006445_020 0.1823473157 - - hypothetical protein L484_026741 [Morus notabilis]
17 Hb_001975_130 0.1828376577 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
18 Hb_005725_150 0.1847837777 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
19 Hb_068194_010 0.1870370552 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
20 Hb_000349_230 0.1873318564 - - PREDICTED: protein TPX2 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_190 Hb_002045_190 Hb_003399_100 Hb_003399_100 Hb_002045_190--Hb_003399_100 Hb_006275_060 Hb_006275_060 Hb_002045_190--Hb_006275_060 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_003399_100--Hb_030627_070 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_003784_040 Hb_003784_040 Hb_006275_060--Hb_003784_040 Hb_006275_060--Hb_005725_150 Hb_004116_120--Hb_033594_040 Hb_000563_440 Hb_000563_440 Hb_004116_120--Hb_000563_440 Hb_004116_120--Hb_002307_020 Hb_004116_120--Hb_006275_060 Hb_004116_120--Hb_003399_100 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_001114_170 Hb_001114_170 Hb_089140_090--Hb_001114_170 Hb_089140_090--Hb_033594_040 Hb_002027_440 Hb_002027_440 Hb_089140_090--Hb_002027_440 Hb_089140_090--Hb_000563_440 Hb_015807_160 Hb_015807_160 Hb_089140_090--Hb_015807_160 Hb_004046_060 Hb_004046_060 Hb_033594_040--Hb_004046_060 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00857 6.46968 119.427 36.2512 2.3401 4.58211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6473 39.5532 11.6321 14.2597 12.1257

CAGE analysis