Hb_015807_160

Information

Type -
Description -
Location Contig15807: 151183-152785
Sequence    

Annotation

kegg
ID cic:CICLE_v10009865mg
description hypothetical protein
nr
ID XP_012070716.1
description PREDICTED: probable histone H2A.1 [Jatropha curcas]
swissprot
ID Q9C681
description Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1
trembl
ID A0A067KS35
description Histone H2A OS=Jatropha curcas GN=JCGZ_00793 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13909: 151177-152800
cDNA
(Sanger)
(ID:Location)		 001_E10.ab1: 151403-152800 , 001_H18.ab1: 151604-152528 , 002_E04.ab1: 151433-152528 , 011_M03.ab1: 151604-152528 , 029_F24.ab1: 151435-152528

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_160 0.0 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
2 Hb_093458_010 0.1139088645 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
3 Hb_001863_070 0.132820889 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
4 Hb_001767_060 0.1378068275 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_040819_010 0.1386716527 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_002028_090 0.1390651336 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
7 Hb_001114_170 0.1398987523 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009486_210 0.1431031925 - - -
9 Hb_000025_370 0.1431415392 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
10 Hb_000008_370 0.1434383905 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
11 Hb_002027_440 0.1445740013 - - conserved hypothetical protein [Ricinus communis]
12 Hb_089140_090 0.1449933571 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
13 Hb_011242_050 0.1456841092 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
14 Hb_000926_200 0.1469957455 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
15 Hb_001376_060 0.1474559154 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
16 Hb_005883_080 0.1482647111 - - type 2A protein phosphatase-2 [Populus trichocarpa]
17 Hb_001178_010 0.1522041223 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
18 Hb_000529_280 0.1527350676 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
19 Hb_004984_030 0.1528626535 - - protein with unknown function [Ricinus communis]
20 Hb_003602_060 0.1594585725 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_015807_160 Hb_015807_160 Hb_093458_010 Hb_093458_010 Hb_015807_160--Hb_093458_010 Hb_001863_070 Hb_001863_070 Hb_015807_160--Hb_001863_070 Hb_001767_060 Hb_001767_060 Hb_015807_160--Hb_001767_060 Hb_040819_010 Hb_040819_010 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_003602_060 Hb_003602_060 Hb_093458_010--Hb_003602_060 Hb_093458_010--Hb_001767_060 Hb_093458_010--Hb_040819_010 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_001863_070--Hb_003602_060 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_154038_020 Hb_154038_020 Hb_001767_060--Hb_154038_020 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_000926_200 Hb_000926_200 Hb_040819_010--Hb_000926_200 Hb_004984_030 Hb_004984_030 Hb_040819_010--Hb_004984_030 Hb_040819_010--Hb_002028_090 Hb_000035_160 Hb_000035_160 Hb_040819_010--Hb_000035_160 Hb_032202_100 Hb_032202_100 Hb_040819_010--Hb_032202_100 Hb_000116_490 Hb_000116_490 Hb_040819_010--Hb_000116_490 Hb_002028_090--Hb_004984_030 Hb_001188_030 Hb_001188_030 Hb_002028_090--Hb_001188_030 Hb_044653_040 Hb_044653_040 Hb_002028_090--Hb_044653_040 Hb_002028_090--Hb_000926_200 Hb_002968_040 Hb_002968_040 Hb_002028_090--Hb_002968_040 Hb_089140_090 Hb_089140_090 Hb_001114_170--Hb_089140_090 Hb_000757_130 Hb_000757_130 Hb_001114_170--Hb_000757_130 Hb_001114_170--Hb_002027_440 Hb_001114_170--Hb_001863_070 Hb_101146_010 Hb_101146_010 Hb_001114_170--Hb_101146_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1117 82.2115 223.644 127.905 16.9708 24.3124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.993 193.132 37.008 54.457 88.4678

CAGE analysis