Hb_101146_010

Information

Type -
Description -
Location Contig101146: 3224-7061
Sequence    

Annotation

kegg
ID rcu:RCOM_0261000
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID XP_012080312.1
description PREDICTED: peregrin-like [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067LLM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00619: 2873-3115 , PASA_asmbl_00621: 5536-6069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101146_010 0.0 - - PREDICTED: peregrin-like [Jatropha curcas]
2 Hb_004117_190 0.1191553455 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
3 Hb_002960_090 0.1340448103 - - protein with unknown function [Ricinus communis]
4 Hb_000757_130 0.1448382598 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007741_130 0.1454630181 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
6 Hb_001114_170 0.1466455332 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000046_310 0.154968482 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
8 Hb_089140_090 0.1601134353 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
9 Hb_015778_040 0.160840012 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
10 Hb_002235_380 0.1624268168 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
11 Hb_089140_110 0.1626497261 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_001767_060 0.1628531777 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_001863_160 0.1635309755 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
14 Hb_006210_020 0.1664278474 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
15 Hb_009557_030 0.1684544065 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
16 Hb_000282_050 0.1702793677 - - calcineurin B, putative [Ricinus communis]
17 Hb_001155_050 0.1716880569 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
18 Hb_001728_020 0.1719888621 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
19 Hb_015807_160 0.1730215692 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
20 Hb_006970_140 0.1746178195 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]

Gene co-expression network

sample Hb_101146_010 Hb_101146_010 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_003540_050 Hb_003540_050 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_000984_260 Hb_000984_260 Hb_002960_090--Hb_000984_260 Hb_002627_020 Hb_002627_020 Hb_002960_090--Hb_002627_020 Hb_006210_020 Hb_006210_020 Hb_002960_090--Hb_006210_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110 Hb_029253_010 Hb_029253_010 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_089140_090 Hb_089140_090 Hb_001114_170--Hb_089140_090 Hb_001114_170--Hb_000757_130 Hb_015807_160 Hb_015807_160 Hb_001114_170--Hb_015807_160 Hb_002027_440 Hb_002027_440 Hb_001114_170--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_001114_170--Hb_001863_070 Hb_000818_120 Hb_000818_120 Hb_000046_310--Hb_000818_120 Hb_000046_310--Hb_001863_160 Hb_018790_050 Hb_018790_050 Hb_000046_310--Hb_018790_050 Hb_000046_310--Hb_001155_050 Hb_080362_010 Hb_080362_010 Hb_000046_310--Hb_080362_010 Hb_000046_310--Hb_007741_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201563 0.8162 1.98271 1.61382 0.0800489 0.169934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.797269 0.940857 0.136057 0.433236 0.50503

CAGE analysis