Hb_000046_310

Information

Type -
Description -
Location Contig46: 243246-245988
Sequence    

Annotation

kegg
ID rcu:RCOM_0679700
description Beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012069407.1
description PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
swissprot
ID Q8VYW2
description Inactive beta-amylase 9 OS=Arabidopsis thaliana GN=BAM9 PE=2 SV=1
trembl
ID A0A067L692
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02023 PE=3 SV=1
Gene Ontology
ID GO:0016161
description inactive beta-amylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43640: 243304-245880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_310 0.0 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
2 Hb_000818_120 0.1018706796 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001863_160 0.113414562 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
4 Hb_018790_050 0.1318580774 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
5 Hb_001155_050 0.1329674149 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
6 Hb_080362_010 0.1383730073 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
7 Hb_007741_130 0.1400362051 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
8 Hb_013358_020 0.1426088317 - - ccr4-associated factor, putative [Ricinus communis]
9 Hb_002686_150 0.1431474776 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_000035_050 0.1461230851 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
11 Hb_000787_080 0.1465333227 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
12 Hb_031822_010 0.1481664749 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
13 Hb_000421_230 0.1489514069 - - retinal degeneration B beta, putative [Ricinus communis]
14 Hb_004117_170 0.1494748616 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
15 Hb_007253_010 0.1499302482 - - syntaxin, putative [Ricinus communis]
16 Hb_021576_150 0.1504832021 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
17 Hb_001191_080 0.1519042791 - - protein with unknown function [Ricinus communis]
18 Hb_015778_040 0.1522817685 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
19 Hb_005701_110 0.1532911499 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
20 Hb_159809_050 0.1540002887 - - AT14A, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_310 Hb_000046_310 Hb_000818_120 Hb_000818_120 Hb_000046_310--Hb_000818_120 Hb_001863_160 Hb_001863_160 Hb_000046_310--Hb_001863_160 Hb_018790_050 Hb_018790_050 Hb_000046_310--Hb_018790_050 Hb_001155_050 Hb_001155_050 Hb_000046_310--Hb_001155_050 Hb_080362_010 Hb_080362_010 Hb_000046_310--Hb_080362_010 Hb_007741_130 Hb_007741_130 Hb_000046_310--Hb_007741_130 Hb_001198_080 Hb_001198_080 Hb_000818_120--Hb_001198_080 Hb_003106_200 Hb_003106_200 Hb_000818_120--Hb_003106_200 Hb_001511_030 Hb_001511_030 Hb_000818_120--Hb_001511_030 Hb_000818_120--Hb_001155_050 Hb_002249_170 Hb_002249_170 Hb_000818_120--Hb_002249_170 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_014231_020 Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_001863_160--Hb_004712_190 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_013358_020 Hb_013358_020 Hb_018790_050--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_018790_050--Hb_004117_170 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_056196_060 Hb_056196_060 Hb_018790_050--Hb_056196_060 Hb_000035_050 Hb_000035_050 Hb_018790_050--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_018790_050--Hb_007253_010 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_001728_020 Hb_001728_020 Hb_080362_010--Hb_001728_020 Hb_003147_070 Hb_003147_070 Hb_080362_010--Hb_003147_070 Hb_080362_010--Hb_018790_050 Hb_080362_010--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_080362_010--Hb_001376_010 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5971 185.612 332.945 191.607 17.4102 34.1576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.3552 82.0925 71.6859 43.8789 64.268

CAGE analysis