Hb_080362_010

Information

Type -
Description -
Location Contig80362: 123-942
Sequence    

Annotation

kegg
ID rcu:RCOM_1340960
description transcription factor, putative
nr
ID KDP28396.1
description hypothetical protein JCGZ_14167 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14167 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080362_010 0.0 - - hypothetical protein JCGZ_14167 [Jatropha curcas]
2 Hb_000046_310 0.1383730073 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
3 Hb_001728_020 0.1442846317 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
4 Hb_003147_070 0.1447042342 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
5 Hb_018790_050 0.1455133715 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
6 Hb_004117_170 0.1527547223 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
7 Hb_001376_010 0.1579878117 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_002042_170 0.1582908431 - - RING/U-box superfamily protein [Theobroma cacao]
9 Hb_000421_230 0.1598532489 - - retinal degeneration B beta, putative [Ricinus communis]
10 Hb_124677_040 0.1624893525 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
11 Hb_031822_010 0.162883748 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
12 Hb_171900_020 0.1654629976 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
13 Hb_013358_020 0.1686404843 - - ccr4-associated factor, putative [Ricinus communis]
14 Hb_004774_020 0.1696532257 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
15 Hb_000925_030 0.171560731 - - ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_003077_050 0.1722161853 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
17 Hb_000638_280 0.1735439557 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_003147_060 0.1740002164 - - syntaxin, plant, putative [Ricinus communis]
19 Hb_000035_050 0.1747201674 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
20 Hb_002686_150 0.1751524074 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_080362_010 Hb_080362_010 Hb_000046_310 Hb_000046_310 Hb_080362_010--Hb_000046_310 Hb_001728_020 Hb_001728_020 Hb_080362_010--Hb_001728_020 Hb_003147_070 Hb_003147_070 Hb_080362_010--Hb_003147_070 Hb_018790_050 Hb_018790_050 Hb_080362_010--Hb_018790_050 Hb_004117_170 Hb_004117_170 Hb_080362_010--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_080362_010--Hb_001376_010 Hb_000818_120 Hb_000818_120 Hb_000046_310--Hb_000818_120 Hb_001863_160 Hb_001863_160 Hb_000046_310--Hb_001863_160 Hb_000046_310--Hb_018790_050 Hb_001155_050 Hb_001155_050 Hb_000046_310--Hb_001155_050 Hb_007741_130 Hb_007741_130 Hb_000046_310--Hb_007741_130 Hb_000529_280 Hb_000529_280 Hb_001728_020--Hb_000529_280 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_026198_010 Hb_026198_010 Hb_001728_020--Hb_026198_010 Hb_172632_050 Hb_172632_050 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_012545_030 Hb_012545_030 Hb_003147_070--Hb_012545_030 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_000510_230 Hb_000510_230 Hb_003147_070--Hb_000510_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_013358_020 Hb_013358_020 Hb_018790_050--Hb_013358_020 Hb_018790_050--Hb_004117_170 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_056196_060 Hb_056196_060 Hb_018790_050--Hb_056196_060 Hb_000035_050 Hb_000035_050 Hb_018790_050--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_018790_050--Hb_007253_010 Hb_004117_170--Hb_000035_050 Hb_004117_170--Hb_013358_020 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_004117_170--Hb_001376_010 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06361 20.6199 18.5487 11.4773 0.309747 4.24202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73546 9.98056 4.93759 3.44656 4.95024

CAGE analysis