Hb_012545_030

Information

Type -
Description -
Location Contig12545: 18142-23718
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G063200g
description hypothetical protein
nr
ID KHN22302.1
description Polyadenylate-binding protein RBP47C [Glycine soja]
swissprot
ID Q9SX79
description Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1
trembl
ID A0A0B2QRK5
description Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_022058 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07808: 18197-23701 , PASA_asmbl_07809: 18197-23310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012545_030 0.0 - - Polyadenylate-binding protein RBP47C [Glycine soja]
2 Hb_000421_230 0.12023957 - - retinal degeneration B beta, putative [Ricinus communis]
3 Hb_005701_110 0.1211231666 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
4 Hb_006120_150 0.1221477463 - - invertase [Hevea brasiliensis]
5 Hb_001511_030 0.1260426836 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
6 Hb_001318_150 0.1317808707 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
7 Hb_003147_070 0.1404679814 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
8 Hb_018790_050 0.1486109019 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_004125_060 0.1497628407 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000818_120 0.1502653864 - - conserved hypothetical protein [Ricinus communis]
11 Hb_025787_010 0.1504230147 - - PREDICTED: histone H1.2-like [Jatropha curcas]
12 Hb_104920_010 0.1520840347 - - hypothetical protein VITISV_031859 [Vitis vinifera]
13 Hb_161901_020 0.153594764 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
14 Hb_000684_100 0.1564549604 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
15 Hb_008173_060 0.1566721273 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
16 Hb_002217_190 0.1566923578 - - invertase [Hevea brasiliensis]
17 Hb_004208_140 0.1580748565 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
18 Hb_001898_130 0.1612907103 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002249_170 0.1617706812 - - copine, putative [Ricinus communis]
20 Hb_002686_150 0.1629581577 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012545_030 Hb_012545_030 Hb_000421_230 Hb_000421_230 Hb_012545_030--Hb_000421_230 Hb_005701_110 Hb_005701_110 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_003147_070 Hb_003147_070 Hb_012545_030--Hb_003147_070 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_001155_050 Hb_001155_050 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_005701_110--Hb_006120_150 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_000123_240 Hb_000123_240 Hb_006120_150--Hb_000123_240 Hb_010891_020 Hb_010891_020 Hb_006120_150--Hb_010891_020 Hb_002042_170 Hb_002042_170 Hb_006120_150--Hb_002042_170 Hb_004208_140 Hb_004208_140 Hb_006120_150--Hb_004208_140 Hb_000818_120 Hb_000818_120 Hb_001511_030--Hb_000818_120 Hb_007426_220 Hb_007426_220 Hb_001511_030--Hb_007426_220 Hb_002249_170 Hb_002249_170 Hb_001511_030--Hb_002249_170 Hb_004659_010 Hb_004659_010 Hb_001511_030--Hb_004659_010 Hb_001511_030--Hb_001155_050 Hb_001318_150--Hb_002249_170 Hb_000272_110 Hb_000272_110 Hb_001318_150--Hb_000272_110 Hb_001085_300 Hb_001085_300 Hb_001318_150--Hb_001085_300 Hb_086639_050 Hb_086639_050 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040 Hb_000111_390 Hb_000111_390 Hb_001318_150--Hb_000111_390 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_003147_070--Hb_000421_230 Hb_000510_230 Hb_000510_230 Hb_003147_070--Hb_000510_230 Hb_003147_070--Hb_004125_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72726 31.1268 45.876 13.066 2.61864 2.51345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62276 13.6602 8.70128 11.9742 8.71487

CAGE analysis