Hb_010891_020

Information

Type -
Description -
Location Contig10891: 18428-21721
Sequence    

Annotation

kegg
ID rcu:RCOM_1314310
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002518937.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID Q9MAP5
description Subtilisin-like protease SBT3.3 OS=Arabidopsis thaliana GN=SBT3.3 PE=2 SV=1
trembl
ID B9RYW8
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1314310 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010891_020 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_027654_080 0.1293439602 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
3 Hb_002766_050 0.1363767215 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
4 Hb_006120_150 0.1444441908 - - invertase [Hevea brasiliensis]
5 Hb_012340_060 0.1486941175 - - conserved hypothetical protein [Ricinus communis]
6 Hb_025787_010 0.1530066903 - - PREDICTED: histone H1.2-like [Jatropha curcas]
7 Hb_004208_140 0.1577962996 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
8 Hb_012799_150 0.1653110142 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
9 Hb_000092_120 0.1685834705 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
10 Hb_000732_190 0.1705840644 - - structural molecule, putative [Ricinus communis]
11 Hb_001616_110 0.1731414389 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_003417_030 0.1772957187 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
13 Hb_000979_110 0.1779966546 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
14 Hb_012545_030 0.1800236517 - - Polyadenylate-binding protein RBP47C [Glycine soja]
15 Hb_001277_050 0.1804537526 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
16 Hb_002232_430 0.1819237634 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
17 Hb_001956_060 0.1833687387 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
18 Hb_000193_260 0.1834519916 - - PREDICTED: protein NEN1 [Jatropha curcas]
19 Hb_000123_220 0.184217875 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
20 Hb_005701_110 0.1847423566 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_010891_020 Hb_010891_020 Hb_027654_080 Hb_027654_080 Hb_010891_020--Hb_027654_080 Hb_002766_050 Hb_002766_050 Hb_010891_020--Hb_002766_050 Hb_006120_150 Hb_006120_150 Hb_010891_020--Hb_006120_150 Hb_012340_060 Hb_012340_060 Hb_010891_020--Hb_012340_060 Hb_025787_010 Hb_025787_010 Hb_010891_020--Hb_025787_010 Hb_004208_140 Hb_004208_140 Hb_010891_020--Hb_004208_140 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_002766_050--Hb_004208_140 Hb_002766_050--Hb_001616_110 Hb_001054_070 Hb_001054_070 Hb_002766_050--Hb_001054_070 Hb_002766_050--Hb_027654_080 Hb_000123_240 Hb_000123_240 Hb_002766_050--Hb_000123_240 Hb_012545_030 Hb_012545_030 Hb_006120_150--Hb_012545_030 Hb_006120_150--Hb_000123_240 Hb_005701_110 Hb_005701_110 Hb_006120_150--Hb_005701_110 Hb_002042_170 Hb_002042_170 Hb_006120_150--Hb_002042_170 Hb_006120_150--Hb_004208_140 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_168319_010 Hb_168319_010 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_004117_270 Hb_004117_270 Hb_025787_010--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_025787_010--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_025787_010--Hb_012799_150 Hb_003417_030 Hb_003417_030 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050 Hb_002900_120 Hb_002900_120 Hb_004208_140--Hb_002900_120 Hb_004774_020 Hb_004774_020 Hb_004208_140--Hb_004774_020 Hb_002387_040 Hb_002387_040 Hb_004208_140--Hb_002387_040 Hb_004208_140--Hb_002042_170 Hb_000156_090 Hb_000156_090 Hb_004208_140--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0253003 0.723611 0.742525 0.318885 0.0422172 0.0159685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210633 0.346549 0.344136 0.550772 0.351685

CAGE analysis