Hb_004429_020

Information

Type -
Description -
Location Contig4429: 15127-20431
Sequence    

Annotation

kegg
ID rcu:RCOM_1620560
description RNA splicing protein mrs2, mitochondrial, putative
nr
ID XP_012067784.1
description PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
swissprot
ID Q9ZPR4
description Magnesium transporter MRS2-5 OS=Arabidopsis thaliana GN=MRS2-5 PE=2 SV=1
trembl
ID A0A067L9Y7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15717 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42736: 15231-20561 , PASA_asmbl_42737: 19887-20097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_020 0.0 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
2 Hb_003913_130 0.0841561311 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
3 Hb_000140_090 0.0862030227 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
4 Hb_001635_190 0.0902294569 - - RNA m5u methyltransferase, putative [Ricinus communis]
5 Hb_002119_130 0.0902863313 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
6 Hb_010578_080 0.0907518972 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
7 Hb_000964_030 0.0911506283 - - ADP/ATP carrier 2 [Theobroma cacao]
8 Hb_001105_110 0.0924383481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003360_040 0.0927290605 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
10 Hb_007218_120 0.0945471993 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
11 Hb_002471_090 0.0962312391 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
12 Hb_007533_040 0.1013285937 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000723_230 0.1014743313 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
14 Hb_000025_350 0.1024129258 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_005653_070 0.1028720441 - - K+ transport growth defect-like protein [Hevea brasiliensis]
16 Hb_006740_030 0.1029021161 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_000120_640 0.1029493457 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007386_040 0.1041376727 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
19 Hb_000008_440 0.1046094901 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
20 Hb_038574_010 0.10573682 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_004429_020 Hb_004429_020 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_001635_190 Hb_001635_190 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_001357_200 Hb_001357_200 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_003913_130--Hb_007533_040 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060 Hb_006740_030 Hb_006740_030 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_000140_090--Hb_010578_080 Hb_000521_240 Hb_000521_240 Hb_001635_190--Hb_000521_240 Hb_002471_090 Hb_002471_090 Hb_001635_190--Hb_002471_090 Hb_011218_090 Hb_011218_090 Hb_001635_190--Hb_011218_090 Hb_001635_190--Hb_002119_130 Hb_010068_080 Hb_010068_080 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_003360_040 Hb_003360_040 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_062226_130 Hb_062226_130 Hb_010578_080--Hb_062226_130 Hb_009296_070 Hb_009296_070 Hb_010578_080--Hb_009296_070 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_005653_070 Hb_005653_070 Hb_000964_030--Hb_005653_070 Hb_038574_010 Hb_038574_010 Hb_000964_030--Hb_038574_010 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56658 11.3156 13.9625 12.7717 3.37039 4.21007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.36265 12.4942 17.7255 12.2486 12.1205

CAGE analysis