Hb_004712_210

Information

Type -
Description -
Location Contig4712: 120871-127083
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09550g
description POPTRDRAFT_568582; NLI interacting factor family protein
nr
ID XP_012074594.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
swissprot
ID Q8VYE2
description Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1
trembl
ID A0A067KLS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09940 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim50-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44284: 121004-126881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_210 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
2 Hb_002534_100 0.0574597516 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
3 Hb_002303_020 0.0647927664 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
4 Hb_010578_080 0.0734089384 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
5 Hb_044653_040 0.0840868119 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
6 Hb_009296_070 0.0858345564 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
7 Hb_002173_070 0.0929269005 - - MRG family protein isoform 2 [Theobroma cacao]
8 Hb_002027_350 0.0935663952 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
9 Hb_000116_490 0.0954878726 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
10 Hb_000840_200 0.0961544873 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
11 Hb_000510_340 0.0962453996 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
12 Hb_004586_420 0.0965076608 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
13 Hb_164390_010 0.0967938723 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
14 Hb_002271_010 0.0990569903 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_000521_240 0.099187284 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
16 Hb_000292_100 0.0994951928 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
17 Hb_000663_060 0.0996834924 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
18 Hb_002400_340 0.0998090351 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
19 Hb_008033_040 0.1013007758 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
20 Hb_002007_080 0.1023212496 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004712_210 Hb_004712_210 Hb_002534_100 Hb_002534_100 Hb_004712_210--Hb_002534_100 Hb_002303_020 Hb_002303_020 Hb_004712_210--Hb_002303_020 Hb_010578_080 Hb_010578_080 Hb_004712_210--Hb_010578_080 Hb_044653_040 Hb_044653_040 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_002534_100--Hb_002303_020 Hb_002534_100--Hb_044653_040 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_000840_200 Hb_000840_200 Hb_002303_020--Hb_000840_200 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_002303_020--Hb_044653_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040 Hb_010578_080--Hb_062226_130 Hb_010578_080--Hb_009296_070 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_005588_080 Hb_005588_080 Hb_009296_070--Hb_005588_080 Hb_003861_060 Hb_003861_060 Hb_009296_070--Hb_003861_060 Hb_009296_070--Hb_062226_130 Hb_003878_090 Hb_003878_090 Hb_009296_070--Hb_003878_090 Hb_009296_070--Hb_000365_230 Hb_021374_030 Hb_021374_030 Hb_002173_070--Hb_021374_030 Hb_007821_030 Hb_007821_030 Hb_002173_070--Hb_007821_030 Hb_003098_070 Hb_003098_070 Hb_002173_070--Hb_003098_070 Hb_000364_050 Hb_000364_050 Hb_002173_070--Hb_000364_050 Hb_000749_010 Hb_000749_010 Hb_002173_070--Hb_000749_010 Hb_001269_130 Hb_001269_130 Hb_002173_070--Hb_001269_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71868 9.97831 15.1326 10.2017 6.33245 5.87237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98895 19.3349 10.0496 14.0185 13.3874

CAGE analysis