Hb_002173_070

Information

Type -
Description -
Location Contig2173: 109758-122343
Sequence    

Annotation

kegg
ID rcu:RCOM_1153870
description chromatin binding protein, putative
nr
ID XP_007047400.1
description MRG family protein isoform 2 [Theobroma cacao]
swissprot
ID Q94C32
description Protein MRG1 OS=Arabidopsis thaliana GN=MRG1 PE=1 SV=1
trembl
ID A0A061DHA5
description MRG family protein isoform 2 OS=Theobroma cacao GN=TCM_000700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nua4 complex subunit eaf3 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22444: 109724-113429 , PASA_asmbl_22445: 121415-121876 , PASA_asmbl_22446: 115641-122189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002173_070 0.0 - - MRG family protein isoform 2 [Theobroma cacao]
2 Hb_021374_030 0.0747258138 - - hypothetical protein RCOM_0351490 [Ricinus communis]
3 Hb_007821_030 0.0810104276 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
4 Hb_003098_070 0.0835610486 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
5 Hb_000364_050 0.086468956 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_000749_010 0.0869504744 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
7 Hb_001269_130 0.0872089374 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
8 Hb_005288_130 0.0883993821 - - protein with unknown function [Ricinus communis]
9 Hb_065525_080 0.0893490321 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
10 Hb_002439_010 0.0900846056 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
11 Hb_000840_200 0.0913624471 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
12 Hb_049575_010 0.091382958 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
13 Hb_000237_200 0.0921168467 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
14 Hb_002400_340 0.0922224713 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_004712_210 0.0929269005 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
16 Hb_001221_440 0.0932429559 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
17 Hb_005542_130 0.0938617003 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
18 Hb_006913_020 0.093923738 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
19 Hb_002303_020 0.0955993937 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
20 Hb_009296_070 0.0961540117 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002173_070 Hb_002173_070 Hb_021374_030 Hb_021374_030 Hb_002173_070--Hb_021374_030 Hb_007821_030 Hb_007821_030 Hb_002173_070--Hb_007821_030 Hb_003098_070 Hb_003098_070 Hb_002173_070--Hb_003098_070 Hb_000364_050 Hb_000364_050 Hb_002173_070--Hb_000364_050 Hb_000749_010 Hb_000749_010 Hb_002173_070--Hb_000749_010 Hb_001269_130 Hb_001269_130 Hb_002173_070--Hb_001269_130 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_005288_130 Hb_005288_130 Hb_007821_030--Hb_005288_130 Hb_001051_050 Hb_001051_050 Hb_007821_030--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_007821_030--Hb_003878_150 Hb_000035_260 Hb_000035_260 Hb_007821_030--Hb_000035_260 Hb_000061_180 Hb_000061_180 Hb_007821_030--Hb_000061_180 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_002205_230 Hb_002205_230 Hb_000749_010--Hb_002205_230 Hb_001377_190 Hb_001377_190 Hb_000749_010--Hb_001377_190 Hb_000363_310 Hb_000363_310 Hb_000749_010--Hb_000363_310 Hb_000749_010--Hb_000599_270 Hb_000111_170 Hb_000111_170 Hb_000749_010--Hb_000111_170 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.34015 5.65834 12.1654 7.60094 4.43521 6.40937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61886 10.0311 5.08917 9.66753 11.9202

CAGE analysis