Hb_000035_260

Information

Type -
Description -
Location Contig35: 302330-311883
Sequence    

Annotation

kegg
ID rcu:RCOM_0920800
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076409.1
description PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
swissprot
ID Q6ETK3
description Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1
trembl
ID A0A067KER0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07074 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 60 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36424: 304826-304917 , PASA_asmbl_36425: 305547-305709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_260 0.0 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
2 Hb_000909_080 0.0902748403 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
3 Hb_000365_010 0.0935365361 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
4 Hb_001141_240 0.0936720751 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_007821_030 0.0955613829 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
6 Hb_000173_130 0.0970148936 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
7 Hb_000815_300 0.097350938 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
8 Hb_081599_010 0.0986007357 - - conserved hypothetical protein [Ricinus communis]
9 Hb_028487_070 0.0998642609 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000007_090 0.1031426859 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
11 Hb_001242_120 0.1036735377 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
12 Hb_000645_280 0.1039081242 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
13 Hb_002740_080 0.1044157332 - - flap endonuclease-1, putative [Ricinus communis]
14 Hb_001269_130 0.1045761576 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
15 Hb_015099_030 0.1049992904 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
16 Hb_004994_020 0.1054070255 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
17 Hb_134849_010 0.105560459 - - ATP synthase subunit d, putative [Ricinus communis]
18 Hb_003878_200 0.1066521747 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
19 Hb_001051_050 0.107164484 - - conserved hypothetical protein [Ricinus communis]
20 Hb_049575_010 0.1074503227 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]

Gene co-expression network

sample Hb_000035_260 Hb_000035_260 Hb_000909_080 Hb_000909_080 Hb_000035_260--Hb_000909_080 Hb_000365_010 Hb_000365_010 Hb_000035_260--Hb_000365_010 Hb_001141_240 Hb_001141_240 Hb_000035_260--Hb_001141_240 Hb_007821_030 Hb_007821_030 Hb_000035_260--Hb_007821_030 Hb_000173_130 Hb_000173_130 Hb_000035_260--Hb_000173_130 Hb_000815_300 Hb_000815_300 Hb_000035_260--Hb_000815_300 Hb_000358_020 Hb_000358_020 Hb_000909_080--Hb_000358_020 Hb_034083_020 Hb_034083_020 Hb_000909_080--Hb_034083_020 Hb_003440_020 Hb_003440_020 Hb_000909_080--Hb_003440_020 Hb_055690_010 Hb_055690_010 Hb_000909_080--Hb_055690_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000365_010--Hb_000358_020 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_001951_060 Hb_001951_060 Hb_000365_010--Hb_001951_060 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_002173_070 Hb_002173_070 Hb_007821_030--Hb_002173_070 Hb_005288_130 Hb_005288_130 Hb_007821_030--Hb_005288_130 Hb_001051_050 Hb_001051_050 Hb_007821_030--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_007821_030--Hb_003878_150 Hb_000061_180 Hb_000061_180 Hb_007821_030--Hb_000061_180 Hb_008289_040 Hb_008289_040 Hb_000173_130--Hb_008289_040 Hb_002445_030 Hb_002445_030 Hb_000173_130--Hb_002445_030 Hb_002552_040 Hb_002552_040 Hb_000173_130--Hb_002552_040 Hb_000703_330 Hb_000703_330 Hb_000173_130--Hb_000703_330 Hb_000173_130--Hb_000815_300 Hb_016734_010 Hb_016734_010 Hb_000173_130--Hb_016734_010 Hb_000815_300--Hb_002552_040 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03263 7.6627 14.5622 18.7482 5.35955 6.52246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89383 12.0766 5.53311 12.6647 18.6176

CAGE analysis