Hb_001301_280

Information

Type -
Description -
Location Contig1301: 192399-196470
Sequence    

Annotation

kegg
ID rcu:RCOM_0584630
description hypothetical protein
nr
ID XP_002522945.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584630 PE=4 SV=1
Gene Ontology
ID GO:0009628
description rho gtpase-activating 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09042: 192422-196288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002486_080 0.0686082227 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
3 Hb_001951_060 0.0737087407 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
4 Hb_000365_010 0.0802966852 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
5 Hb_011671_120 0.0808125765 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
6 Hb_007416_070 0.0885374848 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
7 Hb_001619_060 0.0962294284 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
8 Hb_185830_060 0.1003992038 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_002281_020 0.1014807273 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
10 Hb_002615_030 0.1055704682 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
11 Hb_002193_060 0.1059977751 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
12 Hb_001486_040 0.1080643807 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_004607_070 0.108529712 - - integral membrane protein, putative [Ricinus communis]
14 Hb_016219_010 0.1107472535 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
15 Hb_000270_480 0.1119466957 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
16 Hb_000666_010 0.11202793 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000375_300 0.1140424862 - - PREDICTED: cyanate hydratase [Jatropha curcas]
18 Hb_004957_030 0.1148828858 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
19 Hb_001080_300 0.1152634734 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
20 Hb_005016_010 0.1155604739 - - AMP dependent CoA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001301_280 Hb_001301_280 Hb_002486_080 Hb_002486_080 Hb_001301_280--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_001301_280--Hb_001951_060 Hb_000365_010 Hb_000365_010 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_007416_070 Hb_007416_070 Hb_001301_280--Hb_007416_070 Hb_001619_060 Hb_001619_060 Hb_001301_280--Hb_001619_060 Hb_002486_080--Hb_001951_060 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_034083_020 Hb_034083_020 Hb_001951_060--Hb_034083_020 Hb_001951_060--Hb_007416_070 Hb_001951_060--Hb_000365_010 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_000500_220 Hb_000500_220 Hb_011671_120--Hb_000500_220 Hb_002687_200 Hb_002687_200 Hb_011671_120--Hb_002687_200 Hb_011671_120--Hb_002486_080 Hb_011671_120--Hb_001951_060 Hb_000375_300 Hb_000375_300 Hb_011671_120--Hb_000375_300 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_000009_060 Hb_000009_060 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_001619_060--Hb_000375_300 Hb_000049_160 Hb_000049_160 Hb_001619_060--Hb_000049_160 Hb_029920_060 Hb_029920_060 Hb_001619_060--Hb_029920_060 Hb_002193_060 Hb_002193_060 Hb_001619_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_001619_060--Hb_185830_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.429144 1.9807 3.01848 4.86918 0.56622 1.22528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88046 2.01379 1.12575 3.02075 3.80571

CAGE analysis