Hb_005016_010

Information

Type -
Description -
Location Contig5016: 4683-10197
Sequence    

Annotation

kegg
ID rcu:RCOM_1354540
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_002519487.1
description AMP dependent CoA ligase, putative [Ricinus communis]
swissprot
ID Q9M0X9
description 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1
trembl
ID B9S0G8
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_1354540 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 4-coumarate-- ligase-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45869: 5446-10097 , PASA_asmbl_45870: 6548-6733
cDNA
(Sanger)
(ID:Location)		 019_A19.ab1: 4660-5402

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005016_010 0.0 - - AMP dependent CoA ligase, putative [Ricinus communis]
2 Hb_180378_010 0.0682542443 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
3 Hb_000258_050 0.0763784457 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
4 Hb_002615_030 0.0844538676 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
5 Hb_010390_010 0.0911296094 - - casein kinase, putative [Ricinus communis]
6 Hb_001951_060 0.0958897709 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
7 Hb_177215_030 0.0996090999 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
8 Hb_005218_080 0.1031606872 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000365_010 0.1056223505 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
10 Hb_000358_020 0.1069374718 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
11 Hb_003517_070 0.1073100248 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
12 Hb_001571_060 0.1079562514 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
13 Hb_000181_460 0.1080645311 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
14 Hb_000599_210 0.1094283038 - - serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_000548_070 0.1095885434 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
16 Hb_001473_170 0.109918691 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_000683_050 0.1113111226 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
18 Hb_002486_080 0.1115108563 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
19 Hb_034083_020 0.1124181237 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001301_280 0.1155604739 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005016_010 Hb_005016_010 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_005015_110 Hb_005015_110 Hb_180378_010--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_180378_010--Hb_001571_060 Hb_000139_340 Hb_000139_340 Hb_180378_010--Hb_000139_340 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_180378_010--Hb_005218_080 Hb_001473_170 Hb_001473_170 Hb_000258_050--Hb_001473_170 Hb_000258_050--Hb_001951_060 Hb_007313_040 Hb_007313_040 Hb_000258_050--Hb_007313_040 Hb_007537_030 Hb_007537_030 Hb_000258_050--Hb_007537_030 Hb_034083_020 Hb_034083_020 Hb_000258_050--Hb_034083_020 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_007590_090 Hb_007590_090 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_000494_030 Hb_000494_030 Hb_010390_010--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_010390_010--Hb_001473_170 Hb_007416_070 Hb_007416_070 Hb_010390_010--Hb_007416_070 Hb_001301_280 Hb_001301_280 Hb_001951_060--Hb_001301_280 Hb_001951_060--Hb_034083_020 Hb_002486_080 Hb_002486_080 Hb_001951_060--Hb_002486_080 Hb_001951_060--Hb_007416_070 Hb_001951_060--Hb_000365_010 Hb_000548_070 Hb_000548_070 Hb_177215_030--Hb_000548_070 Hb_177215_030--Hb_180378_010 Hb_177215_030--Hb_002615_030 Hb_000638_130 Hb_000638_130 Hb_177215_030--Hb_000638_130 Hb_000181_460 Hb_000181_460 Hb_177215_030--Hb_000181_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27937 5.1448 4.6131 10.3283 0.844378 1.5185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78939 4.44718 4.08051 8.28564 10.5142

CAGE analysis