Hb_005015_110

Information

Type -
Description -
Location Contig5015: 78510-85063
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06550g
description POPTRDRAFT_1082701; DISPROPORTIONATING ENZYME family protein
nr
ID XP_012075222.1
description PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
swissprot
ID Q06801
description 4-alpha-glucanotransferase, chloroplastic/amyloplastic OS=Solanum tuberosum GN=DPEP PE=1 SV=1
trembl
ID A0A067KSL6
description 4-alpha-glucanotransferase OS=Jatropha curcas GN=JCGZ_09399 PE=3 SV=1
Gene Ontology
ID GO:0016757
description 4-alpha- chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45867: 78413-84828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_110 0.0 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
2 Hb_000465_150 0.0799699184 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
3 Hb_180378_010 0.0810653507 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
4 Hb_001571_060 0.0831993631 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
5 Hb_002486_080 0.0947598371 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
6 Hb_000139_340 0.1093872676 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007416_110 0.1095588803 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
8 Hb_002232_160 0.1111242394 - - Transaminase mtnE, putative [Ricinus communis]
9 Hb_000535_050 0.1150985621 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
10 Hb_012325_010 0.1167952599 - - hypothetical protein RCOM_0068670 [Ricinus communis]
11 Hb_028960_030 0.1178539936 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
12 Hb_006916_110 0.1202443459 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
13 Hb_000358_020 0.121144135 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
14 Hb_001493_150 0.1219870127 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
15 Hb_004291_040 0.1227362144 - - hexokinase [Manihot esculenta]
16 Hb_002232_430 0.1229565201 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
17 Hb_001277_050 0.1229818346 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
18 Hb_000331_510 0.1239280047 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
19 Hb_000666_010 0.1242798373 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003440_020 0.1244523883 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005015_110 Hb_005015_110 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_180378_010 Hb_180378_010 Hb_005015_110--Hb_180378_010 Hb_001571_060 Hb_001571_060 Hb_005015_110--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_005015_110--Hb_002486_080 Hb_000139_340 Hb_000139_340 Hb_005015_110--Hb_000139_340 Hb_007416_110 Hb_007416_110 Hb_005015_110--Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_000465_150--Hb_002486_080 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_005016_010 Hb_005016_010 Hb_180378_010--Hb_005016_010 Hb_180378_010--Hb_001571_060 Hb_180378_010--Hb_000139_340 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_180378_010--Hb_005218_080 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_000139_340--Hb_001571_060 Hb_000139_340--Hb_005218_080 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_003440_020 Hb_003440_020 Hb_007416_110--Hb_003440_020 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50456 7.19379 9.02658 8.689 1.89697 1.30195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35938 5.97101 4.50253 14.5701 12.1329

CAGE analysis