Hb_002900_110

Information

Type -
Description -
Location Contig2900: 160857-164901
Sequence    

Annotation

kegg
ID rcu:RCOM_0498260
description amino acid transporter, putative
nr
ID XP_002530404.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID P92961
description Proline transporter 1 OS=Arabidopsis thaliana GN=PROT1 PE=1 SV=1
trembl
ID B9SWN5
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0498260 PE=4 SV=1
Gene Ontology
ID GO:0016021
description proline transporter 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30405: 160486-164914 , PASA_asmbl_30407: 164235-164622 , PASA_asmbl_30408: 162233-164618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_110 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000139_340 0.0856994667 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001277_030 0.0924040289 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
4 Hb_000914_100 0.1044795651 - - unknown [Glycine max]
5 Hb_001571_060 0.111259848 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
6 Hb_094970_010 0.1138557235 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
7 Hb_000510_080 0.1157019317 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
8 Hb_008147_080 0.1200690844 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
9 Hb_005218_080 0.1214157981 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_180378_010 0.1224422534 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
11 Hb_062226_060 0.1233844911 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
12 Hb_020025_010 0.1240735128 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
13 Hb_005015_110 0.1258080992 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
14 Hb_002762_110 0.1272975388 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000438_140 0.1274406254 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
16 Hb_000909_080 0.1293023652 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
17 Hb_003440_020 0.1296622458 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000358_020 0.1297508168 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
19 Hb_006059_030 0.1297929539 - - glutamate dehydrogenase, putative [Ricinus communis]
20 Hb_000364_050 0.1307469951 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002900_110 Hb_002900_110 Hb_000139_340 Hb_000139_340 Hb_002900_110--Hb_000139_340 Hb_001277_030 Hb_001277_030 Hb_002900_110--Hb_001277_030 Hb_000914_100 Hb_000914_100 Hb_002900_110--Hb_000914_100 Hb_001571_060 Hb_001571_060 Hb_002900_110--Hb_001571_060 Hb_094970_010 Hb_094970_010 Hb_002900_110--Hb_094970_010 Hb_000510_080 Hb_000510_080 Hb_002900_110--Hb_000510_080 Hb_180378_010 Hb_180378_010 Hb_000139_340--Hb_180378_010 Hb_000139_340--Hb_094970_010 Hb_005015_110 Hb_005015_110 Hb_000139_340--Hb_005015_110 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080 Hb_005946_150 Hb_005946_150 Hb_001277_030--Hb_005946_150 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_000364_050 Hb_000364_050 Hb_001277_030--Hb_000364_050 Hb_019040_030 Hb_019040_030 Hb_000914_100--Hb_019040_030 Hb_008147_080 Hb_008147_080 Hb_000914_100--Hb_008147_080 Hb_000077_150 Hb_000077_150 Hb_000914_100--Hb_000077_150 Hb_002811_010 Hb_002811_010 Hb_000914_100--Hb_002811_010 Hb_000197_220 Hb_000197_220 Hb_000914_100--Hb_000197_220 Hb_001571_060--Hb_005015_110 Hb_001571_060--Hb_180378_010 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_002486_080 Hb_002486_080 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_001910_010 Hb_001910_010 Hb_094970_010--Hb_001910_010 Hb_006059_030 Hb_006059_030 Hb_094970_010--Hb_006059_030 Hb_000120_080 Hb_000120_080 Hb_094970_010--Hb_000120_080 Hb_003207_010 Hb_003207_010 Hb_094970_010--Hb_003207_010 Hb_001493_150 Hb_001493_150 Hb_094970_010--Hb_001493_150 Hb_000510_030 Hb_000510_030 Hb_000510_080--Hb_000510_030 Hb_000510_080--Hb_001277_030 Hb_001898_050 Hb_001898_050 Hb_000510_080--Hb_001898_050 Hb_007199_020 Hb_007199_020 Hb_000510_080--Hb_007199_020 Hb_005276_040 Hb_005276_040 Hb_000510_080--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95456 3.475 5.76014 5.6945 1.6409 1.24626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82627 6.32988 2.416 7.76265 11.0152

CAGE analysis