Hb_180378_010

Information

Type -
Description -
Location Contig180378: 2292-3854
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06550g
description POPTRDRAFT_1082701; DISPROPORTIONATING ENZYME family protein
nr
ID XP_011025608.1
description PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
swissprot
ID Q06801
description 4-alpha-glucanotransferase, chloroplastic/amyloplastic OS=Solanum tuberosum GN=DPEP PE=1 SV=1
trembl
ID B9HFX9
description 4-alpha-glucanotransferase OS=Populus trichocarpa GN=POPTR_0007s06550g PE=3 SV=1
Gene Ontology
ID GO:0004134
description 4-alpha- chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180378_010 0.0 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
2 Hb_005016_010 0.0682542443 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_005015_110 0.0810653507 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
4 Hb_001571_060 0.0903039561 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
5 Hb_000139_340 0.0907678614 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000358_020 0.0927619484 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
7 Hb_005218_080 0.096978525 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002486_080 0.100060766 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
9 Hb_010390_010 0.1033566743 - - casein kinase, putative [Ricinus communis]
10 Hb_000548_070 0.1041601092 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
11 Hb_001951_060 0.1049329367 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_177215_030 0.104934259 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
13 Hb_000035_390 0.1078481561 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
14 Hb_002615_030 0.1108908531 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
15 Hb_003440_020 0.1131461205 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_003517_070 0.1144515154 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
17 Hb_009615_060 0.115074638 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
18 Hb_007416_110 0.1155085374 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_000535_050 0.1160308955 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
20 Hb_000909_080 0.1177252339 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_180378_010 Hb_180378_010 Hb_005016_010 Hb_005016_010 Hb_180378_010--Hb_005016_010 Hb_005015_110 Hb_005015_110 Hb_180378_010--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_180378_010--Hb_001571_060 Hb_000139_340 Hb_000139_340 Hb_180378_010--Hb_000139_340 Hb_000358_020 Hb_000358_020 Hb_180378_010--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_180378_010--Hb_005218_080 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_005015_110--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_005015_110--Hb_002486_080 Hb_005015_110--Hb_000139_340 Hb_007416_110 Hb_007416_110 Hb_005015_110--Hb_007416_110 Hb_004218_180 Hb_004218_180 Hb_001571_060--Hb_004218_180 Hb_000666_010 Hb_000666_010 Hb_001571_060--Hb_000666_010 Hb_001571_060--Hb_002486_080 Hb_000535_050 Hb_000535_050 Hb_001571_060--Hb_000535_050 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_000139_340--Hb_001571_060 Hb_000139_340--Hb_005218_080 Hb_000909_080 Hb_000909_080 Hb_000358_020--Hb_000909_080 Hb_055690_010 Hb_055690_010 Hb_000358_020--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000358_020--Hb_003440_020 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_005218_080--Hb_003440_020 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6539 6.37636 7.06513 11.6711 1.88495 1.39096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38119 5.81648 5.40783 12.2245 15.1113

CAGE analysis