Hb_000666_010

Information

Type -
Description -
Location Contig666: 3778-9537
Sequence    

Annotation

kegg
ID rcu:RCOM_0843800
description hypothetical protein
nr
ID XP_002526034.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O29470
description Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1
trembl
ID B9SJ65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0843800 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53241: 3782-3950 , PASA_asmbl_53243: 6296-6558 , PASA_asmbl_53244: 4242-9682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000666_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000535_050 0.06966827 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
3 Hb_001956_060 0.0776488635 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
4 Hb_007904_300 0.079085961 - - copine, putative [Ricinus communis]
5 Hb_000510_170 0.085790361 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_001811_170 0.0863103 - - dynamin, putative [Ricinus communis]
7 Hb_000012_240 0.0868351544 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
8 Hb_002445_030 0.0896622484 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
9 Hb_001141_240 0.0909572065 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_000227_160 0.0925233264 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
11 Hb_001571_060 0.0928185579 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
12 Hb_007416_070 0.0935124155 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
13 Hb_000960_080 0.0968457925 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
14 Hb_002486_080 0.1008780388 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
15 Hb_027760_060 0.1009940236 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_000711_010 0.1029073575 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
17 Hb_008289_040 0.1029966241 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
18 Hb_000059_240 0.1030453798 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_000638_130 0.1030491858 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
20 Hb_116349_120 0.1041100887 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000666_010 Hb_000666_010 Hb_000535_050 Hb_000535_050 Hb_000666_010--Hb_000535_050 Hb_001956_060 Hb_001956_060 Hb_000666_010--Hb_001956_060 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000012_240 Hb_000012_240 Hb_000666_010--Hb_000012_240 Hb_000535_050--Hb_007904_300 Hb_004218_180 Hb_004218_180 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_001586_030 Hb_001586_030 Hb_000535_050--Hb_001586_030 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000110_300 Hb_000110_300 Hb_001956_060--Hb_000110_300 Hb_006824_010 Hb_006824_010 Hb_007904_300--Hb_006824_010 Hb_008948_020 Hb_008948_020 Hb_007904_300--Hb_008948_020 Hb_000059_240 Hb_000059_240 Hb_007904_300--Hb_000059_240 Hb_000139_080 Hb_000139_080 Hb_007904_300--Hb_000139_080 Hb_000684_500 Hb_000684_500 Hb_007904_300--Hb_000684_500 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_000638_130 Hb_000638_130 Hb_000510_170--Hb_000638_130 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_000012_240--Hb_000711_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20341 13.7406 13.3781 16.7843 2.73728 4.45926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44968 6.14121 8.21747 14.3639 14.7796

CAGE analysis