Hb_000012_240

Information

Type -
Description -
Location Contig12: 326142-332066
Sequence    

Annotation

kegg
ID rcu:RCOM_0798270
description ferrochelatase, putative (EC:4.99.1.1)
nr
ID XP_012077315.1
description PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
swissprot
ID P42044
description Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1
trembl
ID A0A067KGI3
description Ferrochelatase OS=Jatropha curcas GN=JCGZ_07689 PE=3 SV=1
Gene Ontology
ID GO:0004325
description ferrochelatase- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06004: 328008-332014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_240 0.0 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
2 Hb_000711_010 0.0739084357 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
3 Hb_000666_010 0.0868351544 - - conserved hypothetical protein [Ricinus communis]
4 Hb_026198_010 0.0879571558 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
5 Hb_001956_060 0.0896103614 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
6 Hb_002349_030 0.0937788218 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000704_030 0.0943814249 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
8 Hb_000120_810 0.0963987676 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
9 Hb_002046_060 0.0985974464 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
10 Hb_004994_180 0.1003859141 - - malic enzyme, putative [Ricinus communis]
11 Hb_000029_190 0.1006686504 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
12 Hb_000912_100 0.1033508674 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
13 Hb_000110_300 0.1033881328 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
14 Hb_006970_050 0.1034841473 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_001328_080 0.1039105799 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
16 Hb_060094_010 0.1042314515 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
17 Hb_002915_060 0.1042945775 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
18 Hb_002217_090 0.1063782978 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
19 Hb_012262_030 0.1068831054 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
20 Hb_000656_390 0.1076505447 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000012_240 Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_000012_240--Hb_000711_010 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_000711_010--Hb_002349_030 Hb_002965_050 Hb_002965_050 Hb_000711_010--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_000711_010--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_000535_050 Hb_000535_050 Hb_000666_010--Hb_000535_050 Hb_000666_010--Hb_001956_060 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000110_300 Hb_000110_300 Hb_001956_060--Hb_000110_300 Hb_002349_030--Hb_060094_010 Hb_001729_020 Hb_001729_020 Hb_002349_030--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_002349_030--Hb_000197_180 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060 Hb_000704_030--Hb_000120_810 Hb_189216_010 Hb_189216_010 Hb_000704_030--Hb_189216_010 Hb_005563_070 Hb_005563_070 Hb_000704_030--Hb_005563_070 Hb_007839_020 Hb_007839_020 Hb_000704_030--Hb_007839_020 Hb_172426_030 Hb_172426_030 Hb_000704_030--Hb_172426_030 Hb_000704_030--Hb_026198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89798 16.9028 14.6503 20.5199 2.7407 3.90595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94067 7.84533 7.86035 11.3301 10.2992

CAGE analysis