Hb_000510_080

Information

Type -
Description -
Location Contig510: 82313-83752
Sequence    

Annotation

kegg
ID mdm:103417646
description histone H1.2-like
nr
ID XP_006443896.1
description hypothetical protein CICLE_v10021453mg [Citrus clementina]
swissprot
ID P26568
description Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1
trembl
ID V4U4S0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021453mg PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46265: 81884-83760 , PASA_asmbl_46266: 76748-83760
cDNA
(Sanger)
(ID:Location)		 002_C15.ab1: 82842-83760 , 002_D22.ab1: 82792-83760 , 013_C06.ab1: 82863-83748 , 033_F03.ab1: 82908-83760 , 034_N16.ab1: 82843-83754 , 040_G11.ab1: 82855-83760 , 046_J18.ab1: 82857-83760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_080 0.0 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
2 Hb_002900_110 0.1157019317 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000510_030 0.1207620133 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
4 Hb_001277_030 0.1284279956 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
5 Hb_001898_050 0.1307402959 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
6 Hb_007199_020 0.1308534175 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
7 Hb_005276_040 0.1317861758 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
8 Hb_004123_020 0.1319237126 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_000139_340 0.1321980098 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000210_060 0.1324768015 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
11 Hb_027298_030 0.1328041877 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_000392_550 0.135391001 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004317_030 0.1358325172 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
14 Hb_000187_040 0.1373117395 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
15 Hb_168893_020 0.1385371602 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
16 Hb_000107_270 0.1428302135 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
17 Hb_000174_260 0.1437495279 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
18 Hb_003207_010 0.1445860856 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
19 Hb_000154_040 0.1484453423 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
20 Hb_000035_270 0.1500328886 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_080 Hb_000510_080 Hb_002900_110 Hb_002900_110 Hb_000510_080--Hb_002900_110 Hb_000510_030 Hb_000510_030 Hb_000510_080--Hb_000510_030 Hb_001277_030 Hb_001277_030 Hb_000510_080--Hb_001277_030 Hb_001898_050 Hb_001898_050 Hb_000510_080--Hb_001898_050 Hb_007199_020 Hb_007199_020 Hb_000510_080--Hb_007199_020 Hb_005276_040 Hb_005276_040 Hb_000510_080--Hb_005276_040 Hb_000139_340 Hb_000139_340 Hb_002900_110--Hb_000139_340 Hb_002900_110--Hb_001277_030 Hb_000914_100 Hb_000914_100 Hb_002900_110--Hb_000914_100 Hb_001571_060 Hb_001571_060 Hb_002900_110--Hb_001571_060 Hb_094970_010 Hb_094970_010 Hb_002900_110--Hb_094970_010 Hb_004317_030 Hb_004317_030 Hb_000510_030--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000510_030--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_000032_370 Hb_000032_370 Hb_000510_030--Hb_000032_370 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_005946_150 Hb_005946_150 Hb_001277_030--Hb_005946_150 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_000364_050 Hb_000364_050 Hb_001277_030--Hb_000364_050 Hb_000210_060 Hb_000210_060 Hb_001898_050--Hb_000210_060 Hb_000330_090 Hb_000330_090 Hb_001898_050--Hb_000330_090 Hb_001898_050--Hb_000392_550 Hb_001408_060 Hb_001408_060 Hb_001898_050--Hb_001408_060 Hb_001898_050--Hb_007199_020 Hb_007904_230 Hb_007904_230 Hb_001898_050--Hb_007904_230 Hb_007199_020--Hb_000330_090 Hb_001804_090 Hb_001804_090 Hb_007199_020--Hb_001804_090 Hb_001623_500 Hb_001623_500 Hb_007199_020--Hb_001623_500 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007199_020--Hb_007904_230 Hb_000174_260 Hb_000174_260 Hb_007199_020--Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.2322 71.6901 295.723 161.309 25.4141 35.141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
226.527 285.27 108.503 302.117 314.377

CAGE analysis