Hb_000197_220

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig197: 249008-259112
Sequence    

Annotation

kegg
ID rcu:RCOM_1448120
description hypothetical protein
nr
ID XP_002512944.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O94481
description Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdp1 PE=3 SV=2
trembl
ID B9RH85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1448120 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeodomain superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19776: 248957-254686 , PASA_asmbl_19777: 255875-257745 , PASA_asmbl_19778: 255888-256182 , PASA_asmbl_19779: 257754-259022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_220 0.0 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
2 Hb_000914_100 0.1149469469 - - unknown [Glycine max]
3 Hb_004785_080 0.1170491897 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
4 Hb_000896_050 0.1202124316 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
5 Hb_003106_190 0.1277735655 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
6 Hb_001098_050 0.1297453206 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
7 Hb_000010_290 0.1304412128 - - -
8 Hb_002811_010 0.1305198526 - - cysteine synthase, putative [Ricinus communis]
9 Hb_000204_070 0.1309452403 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
10 Hb_122968_010 0.1319491343 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
11 Hb_000789_200 0.1321213142 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
12 Hb_002131_030 0.1322009986 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
13 Hb_011537_060 0.132283967 - - UPF0061 protein azo1574 [Morus notabilis]
14 Hb_020025_010 0.1341091466 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
15 Hb_084670_010 0.1345747115 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000656_070 0.1365327847 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002301_100 0.1372826416 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
18 Hb_000648_040 0.1373953177 - - unknown [Populus trichocarpa]
19 Hb_000041_010 0.1376282091 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
20 Hb_005731_160 0.1393473447 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000197_220 Hb_000197_220 Hb_000914_100 Hb_000914_100 Hb_000197_220--Hb_000914_100 Hb_004785_080 Hb_004785_080 Hb_000197_220--Hb_004785_080 Hb_000896_050 Hb_000896_050 Hb_000197_220--Hb_000896_050 Hb_003106_190 Hb_003106_190 Hb_000197_220--Hb_003106_190 Hb_001098_050 Hb_001098_050 Hb_000197_220--Hb_001098_050 Hb_000010_290 Hb_000010_290 Hb_000197_220--Hb_000010_290 Hb_019040_030 Hb_019040_030 Hb_000914_100--Hb_019040_030 Hb_008147_080 Hb_008147_080 Hb_000914_100--Hb_008147_080 Hb_000077_150 Hb_000077_150 Hb_000914_100--Hb_000077_150 Hb_002900_110 Hb_002900_110 Hb_000914_100--Hb_002900_110 Hb_002811_010 Hb_002811_010 Hb_000914_100--Hb_002811_010 Hb_000204_070 Hb_000204_070 Hb_004785_080--Hb_000204_070 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_052764_110 Hb_052764_110 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200 Hb_003159_050 Hb_003159_050 Hb_000896_050--Hb_003159_050 Hb_011537_060 Hb_011537_060 Hb_000896_050--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_000896_050--Hb_007933_040 Hb_000062_510 Hb_000062_510 Hb_000896_050--Hb_000062_510 Hb_007741_120 Hb_007741_120 Hb_000896_050--Hb_007741_120 Hb_001975_150 Hb_001975_150 Hb_000896_050--Hb_001975_150 Hb_003106_190--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_003106_190--Hb_000613_110 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_003994_110 Hb_003994_110 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_003106_190--Hb_000077_150 Hb_002908_040 Hb_002908_040 Hb_001098_050--Hb_002908_040 Hb_004724_410 Hb_004724_410 Hb_001098_050--Hb_004724_410 Hb_001223_010 Hb_001223_010 Hb_001098_050--Hb_001223_010 Hb_000215_160 Hb_000215_160 Hb_001098_050--Hb_000215_160 Hb_000950_060 Hb_000950_060 Hb_001098_050--Hb_000950_060 Hb_002518_120 Hb_002518_120 Hb_000010_290--Hb_002518_120 Hb_000676_200 Hb_000676_200 Hb_000010_290--Hb_000676_200 Hb_001824_090 Hb_001824_090 Hb_000010_290--Hb_001824_090 Hb_003544_010 Hb_003544_010 Hb_000010_290--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_000010_290--Hb_003475_020 Hb_000010_290--Hb_003994_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11403 2.59193 3.46536 3.7726 2.96971 3.75294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28209 5.11375 1.64928 8.98067 11.0609

CAGE analysis