Hb_000204_070

Information

Type -
Description -
Location Contig204: 105441-110336
Sequence    

Annotation

kegg
ID tcc:TCM_038303
description Pentatricopeptide repeat-containing protein isoform 1
nr
ID XP_012078614.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
swissprot
ID Q3EDF8
description Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
trembl
ID A0A067KBB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20892: 109538-109701 , PASA_asmbl_20893: 107466-111767 , PASA_asmbl_20894: 108260-108679 , PASA_asmbl_20895: 109051-109195 , PASA_asmbl_20896: 109786-109944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
2 Hb_004218_180 0.107647947 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
3 Hb_004785_080 0.1091846625 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
4 Hb_004306_120 0.1124383227 - - DNA binding protein, putative [Ricinus communis]
5 Hb_002908_040 0.1185745575 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
6 Hb_003849_280 0.120777479 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
7 Hb_001478_010 0.1220596625 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
8 Hb_002805_210 0.1231431374 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
9 Hb_001691_200 0.1239532326 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
10 Hb_002235_100 0.125149013 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
11 Hb_011224_160 0.1266482041 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_011537_060 0.1271190652 - - UPF0061 protein azo1574 [Morus notabilis]
13 Hb_000215_360 0.1275767752 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_073171_100 0.1290151721 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
15 Hb_002213_020 0.1296209569 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
16 Hb_011485_060 0.1306820818 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
17 Hb_000197_220 0.1309452403 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
18 Hb_000072_170 0.1317815485 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
19 Hb_011021_050 0.1318821844 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
20 Hb_001269_650 0.1320645424 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000204_070 Hb_000204_070 Hb_004218_180 Hb_004218_180 Hb_000204_070--Hb_004218_180 Hb_004785_080 Hb_004785_080 Hb_000204_070--Hb_004785_080 Hb_004306_120 Hb_004306_120 Hb_000204_070--Hb_004306_120 Hb_002908_040 Hb_002908_040 Hb_000204_070--Hb_002908_040 Hb_003849_280 Hb_003849_280 Hb_000204_070--Hb_003849_280 Hb_001478_010 Hb_001478_010 Hb_000204_070--Hb_001478_010 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_011537_060 Hb_011537_060 Hb_004218_180--Hb_011537_060 Hb_001975_150 Hb_001975_150 Hb_004218_180--Hb_001975_150 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_000197_220 Hb_000197_220 Hb_004785_080--Hb_000197_220 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_052764_110 Hb_052764_110 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200 Hb_002609_080 Hb_002609_080 Hb_004306_120--Hb_002609_080 Hb_011021_050 Hb_011021_050 Hb_004306_120--Hb_011021_050 Hb_004306_120--Hb_003849_280 Hb_000363_300 Hb_000363_300 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_001223_010 Hb_001223_010 Hb_002908_040--Hb_001223_010 Hb_007472_090 Hb_007472_090 Hb_002908_040--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_002908_040--Hb_002639_110 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_013459_020 Hb_013459_020 Hb_003849_280--Hb_013459_020 Hb_001716_040 Hb_001716_040 Hb_001478_010--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_001478_010--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_001478_010--Hb_000635_060 Hb_000640_040 Hb_000640_040 Hb_001478_010--Hb_000640_040 Hb_001478_010--Hb_001975_150 Hb_000805_100 Hb_000805_100 Hb_001478_010--Hb_000805_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.608304 1.72933 0.867118 1.00188 0.541429 0.655962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.821102 1.49569 0.594665 2.52546 2.62737

CAGE analysis