Hb_004785_080

Information

Type -
Description -
Location Contig4785: 99890-103946
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21250g
description hypothetical protein
nr
ID XP_006383618.1
description hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID U5GDA2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21250g PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase ht1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44557: 99666-103948
cDNA
(Sanger)
(ID:Location)		 021_B01.ab1: 99666-103780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_080 0.0 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
2 Hb_000204_070 0.1091846625 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
3 Hb_000197_220 0.1170491897 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
4 Hb_158560_010 0.1236405517 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
5 Hb_052764_110 0.1259999164 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
6 Hb_001999_210 0.1281942437 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
7 Hb_000789_200 0.1282622989 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
8 Hb_000648_040 0.13021096 - - unknown [Populus trichocarpa]
9 Hb_114151_020 0.1307373054 - - glucan water dikinase 2 [Manihot esculenta]
10 Hb_003106_190 0.1310676256 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_000392_160 0.1333431454 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
12 Hb_000613_070 0.1345763046 - - -
13 Hb_000914_100 0.1353965979 - - unknown [Glycine max]
14 Hb_001478_010 0.1362737494 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
15 Hb_027337_020 0.1369701928 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
16 Hb_000749_090 0.1380293265 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_003849_280 0.1384561129 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
18 Hb_012627_040 0.1389072476 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
19 Hb_011364_020 0.1393985761 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_011485_060 0.1396222446 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_080 Hb_004785_080 Hb_000204_070 Hb_000204_070 Hb_004785_080--Hb_000204_070 Hb_000197_220 Hb_000197_220 Hb_004785_080--Hb_000197_220 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_052764_110 Hb_052764_110 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200 Hb_004218_180 Hb_004218_180 Hb_000204_070--Hb_004218_180 Hb_004306_120 Hb_004306_120 Hb_000204_070--Hb_004306_120 Hb_002908_040 Hb_002908_040 Hb_000204_070--Hb_002908_040 Hb_003849_280 Hb_003849_280 Hb_000204_070--Hb_003849_280 Hb_001478_010 Hb_001478_010 Hb_000204_070--Hb_001478_010 Hb_000914_100 Hb_000914_100 Hb_000197_220--Hb_000914_100 Hb_000896_050 Hb_000896_050 Hb_000197_220--Hb_000896_050 Hb_003106_190 Hb_003106_190 Hb_000197_220--Hb_003106_190 Hb_001098_050 Hb_001098_050 Hb_000197_220--Hb_001098_050 Hb_000010_290 Hb_000010_290 Hb_000197_220--Hb_000010_290 Hb_000648_040 Hb_000648_040 Hb_158560_010--Hb_000648_040 Hb_003417_040 Hb_003417_040 Hb_158560_010--Hb_003417_040 Hb_158560_010--Hb_003849_280 Hb_000614_150 Hb_000614_150 Hb_158560_010--Hb_000614_150 Hb_001080_090 Hb_001080_090 Hb_158560_010--Hb_001080_090 Hb_000110_270 Hb_000110_270 Hb_158560_010--Hb_000110_270 Hb_001452_210 Hb_001452_210 Hb_052764_110--Hb_001452_210 Hb_007023_030 Hb_007023_030 Hb_052764_110--Hb_007023_030 Hb_002338_050 Hb_002338_050 Hb_052764_110--Hb_002338_050 Hb_000053_060 Hb_000053_060 Hb_052764_110--Hb_000053_060 Hb_098315_080 Hb_098315_080 Hb_052764_110--Hb_098315_080 Hb_005463_110 Hb_005463_110 Hb_001999_210--Hb_005463_110 Hb_000613_070 Hb_000613_070 Hb_001999_210--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_001999_210--Hb_000186_050 Hb_001999_210--Hb_000789_200 Hb_003544_160 Hb_003544_160 Hb_001999_210--Hb_003544_160 Hb_002768_060 Hb_002768_060 Hb_001999_210--Hb_002768_060 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000789_200--Hb_002768_060 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0746 1.64409 0.766085 1.66816 0.583418 1.17998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50717 1.6867 0.582921 2.6473 4.16213

CAGE analysis