Hb_002338_050

Information

Type -
Description -
Location Contig2338: 84774-88017
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02830g
description POPTRDRAFT_891635; hypothetical protein
nr
ID XP_011014758.1
description PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FWE1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24551: 85581-86353 , PASA_asmbl_24552: 86699-89109 , PASA_asmbl_24553: 87429-87808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002338_050 0.0 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
2 Hb_004480_100 0.0954067358 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
3 Hb_007023_030 0.098533396 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
4 Hb_003467_030 0.1052579501 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_001242_130 0.1064062804 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
6 Hb_002768_060 0.1106302998 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_000789_200 0.1111956372 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
8 Hb_001227_080 0.1129359352 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_019337_020 0.1140251003 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
10 Hb_004449_080 0.1152801072 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
11 Hb_002908_050 0.1175605585 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
12 Hb_002639_110 0.1177432357 - - hypothetical protein L484_011673 [Morus notabilis]
13 Hb_000204_120 0.1202044439 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
14 Hb_004411_060 0.1202297192 - - acetolactate synthase, putative [Ricinus communis]
15 Hb_001865_070 0.1211506599 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
16 Hb_001357_020 0.1220220462 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
17 Hb_000358_050 0.1232641073 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
18 Hb_000106_120 0.1236881736 - - hypothetical protein glysoja_007050 [Glycine soja]
19 Hb_000189_550 0.1261630753 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
20 Hb_012725_060 0.1269743634 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002338_050 Hb_002338_050 Hb_004480_100 Hb_004480_100 Hb_002338_050--Hb_004480_100 Hb_007023_030 Hb_007023_030 Hb_002338_050--Hb_007023_030 Hb_003467_030 Hb_003467_030 Hb_002338_050--Hb_003467_030 Hb_001242_130 Hb_001242_130 Hb_002338_050--Hb_001242_130 Hb_002768_060 Hb_002768_060 Hb_002338_050--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_002338_050--Hb_000789_200 Hb_004480_100--Hb_002768_060 Hb_004480_100--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_001876_010 Hb_001876_010 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_007023_030--Hb_002768_060 Hb_007023_030--Hb_004480_100 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_007023_030--Hb_003467_030 Hb_007023_030--Hb_001876_010 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_012725_060 Hb_012725_060 Hb_001242_130--Hb_012725_060 Hb_027472_070 Hb_027472_070 Hb_001242_130--Hb_027472_070 Hb_004712_130 Hb_004712_130 Hb_001242_130--Hb_004712_130 Hb_000479_140 Hb_000479_140 Hb_001242_130--Hb_000479_140 Hb_000497_300 Hb_000497_300 Hb_001242_130--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001242_130--Hb_001352_020 Hb_002768_060--Hb_001876_010 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000789_200--Hb_000656_010 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91059 3.86487 1.48097 2.87105 2.88987 3.40153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89508 3.80349 5.001 7.80583 9.0865

CAGE analysis