Hb_003467_030

Information

Type -
Description -
Location Contig3467: 52052-56672
Sequence    

Annotation

kegg
ID rcu:RCOM_1268730
description ankyrin repeat-containing protein, putative
nr
ID XP_012081926.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067KBC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19273 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36154: 52059-56565 , PASA_asmbl_36155: 54699-54883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003467_030 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_007023_030 0.0917460441 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
3 Hb_002768_060 0.0938476571 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
4 Hb_000204_120 0.0947228174 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
5 Hb_001435_030 0.0952074477 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
6 Hb_003994_110 0.1006711776 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
7 Hb_011386_020 0.1007442468 - - unnamed protein product [Vitis vinifera]
8 Hb_006274_050 0.1051259113 - - hypothetical protein VITISV_022618 [Vitis vinifera]
9 Hb_002338_050 0.1052579501 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
10 Hb_000388_090 0.1080211294 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
11 Hb_007922_020 0.1084203397 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
12 Hb_000261_060 0.108843916 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
13 Hb_002276_020 0.1108873673 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
14 Hb_000665_130 0.1110269684 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
15 Hb_001357_020 0.1127780525 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
16 Hb_005736_020 0.1135398182 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
17 Hb_002055_040 0.1139896539 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
18 Hb_005253_030 0.1147863043 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_003089_020 0.1156673249 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
20 Hb_000883_060 0.11595542 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003467_030 Hb_003467_030 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_002768_060--Hb_004480_100 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_005736_020 Hb_005736_020 Hb_000204_120--Hb_005736_020 Hb_002686_090 Hb_002686_090 Hb_000204_120--Hb_002686_090 Hb_011671_410 Hb_011671_410 Hb_000204_120--Hb_011671_410 Hb_001865_070 Hb_001865_070 Hb_000204_120--Hb_001865_070 Hb_000388_090 Hb_000388_090 Hb_000204_120--Hb_000388_090 Hb_000672_040 Hb_000672_040 Hb_000204_120--Hb_000672_040 Hb_036790_080 Hb_036790_080 Hb_001435_030--Hb_036790_080 Hb_000261_060 Hb_000261_060 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_002055_040 Hb_002055_040 Hb_001435_030--Hb_002055_040 Hb_005253_030 Hb_005253_030 Hb_001435_030--Hb_005253_030 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_011386_020--Hb_003544_010 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_000337_050 Hb_000337_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.36886 8.53237 5.40468 9.02654 7.19191 12.0521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.485 7.61313 16.2892 14.7569 28.3666

CAGE analysis