Hb_000019_200

Information

Type -
Description -
Location Contig19: 194269-208130
Sequence    

Annotation

kegg
ID cmo:103491710
description histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4
nr
ID XP_012067355.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
swissprot
ID Q8GZB6
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2
trembl
ID A0A067L3Q8
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_26876 PE=4 SV=1
Gene Ontology
ID GO:0043229
description histone-lysine n- h3 lysine-9 specific suvh4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_200 0.0 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
2 Hb_002748_020 0.0921853293 - - transducin family protein [Populus trichocarpa]
3 Hb_001629_030 0.0991564741 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
4 Hb_165928_040 0.1013421496 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
5 Hb_000046_540 0.104611599 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
6 Hb_000189_550 0.1046860851 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
7 Hb_006277_010 0.1064434726 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
8 Hb_000656_010 0.1075541923 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
9 Hb_005601_040 0.1086175527 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
10 Hb_002078_340 0.1101529108 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_000365_240 0.1103610111 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
12 Hb_000922_030 0.1105548398 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
13 Hb_002055_040 0.1170008987 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
14 Hb_001975_150 0.1193623841 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
15 Hb_012393_030 0.119562174 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
16 Hb_003206_110 0.1198244881 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
17 Hb_002768_060 0.1201495818 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
18 Hb_011228_010 0.1220184515 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000309_050 0.1221572458 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
20 Hb_002769_030 0.122553912 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000019_200 Hb_000019_200 Hb_002748_020 Hb_002748_020 Hb_000019_200--Hb_002748_020 Hb_001629_030 Hb_001629_030 Hb_000019_200--Hb_001629_030 Hb_165928_040 Hb_165928_040 Hb_000019_200--Hb_165928_040 Hb_000046_540 Hb_000046_540 Hb_000019_200--Hb_000046_540 Hb_000189_550 Hb_000189_550 Hb_000019_200--Hb_000189_550 Hb_006277_010 Hb_006277_010 Hb_000019_200--Hb_006277_010 Hb_002748_020--Hb_001629_030 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070 Hb_001818_100 Hb_001818_100 Hb_001629_030--Hb_001818_100 Hb_001629_030--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_001629_030--Hb_004108_160 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_165928_040--Hb_000556_090 Hb_165928_040--Hb_000189_550 Hb_011228_010 Hb_011228_010 Hb_165928_040--Hb_011228_010 Hb_002055_040 Hb_002055_040 Hb_165928_040--Hb_002055_040 Hb_165928_040--Hb_004108_160 Hb_002078_340 Hb_002078_340 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470 Hb_001876_010 Hb_001876_010 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000011_060 Hb_000011_060 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000189_550--Hb_000656_010 Hb_004046_030 Hb_004046_030 Hb_006277_010--Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_006277_010--Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_000185_220 Hb_000185_220 Hb_006277_010--Hb_000185_220 Hb_006277_010--Hb_005601_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59737 1.98569 3.48433 3.93063 2.50985 3.11921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0873 2.19234 6.3843 6.09894 8.28447

CAGE analysis