Hb_165928_040

Information

Type -
Description -
Location Contig165928: 22145-28810
Sequence    

Annotation

kegg
ID rcu:RCOM_0566120
description hypothetical protein
nr
ID XP_012086280.1
description PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
swissprot
ID Q9LM25
description ERAD-associated E3 ubiquitin-protein ligase component HRD3A OS=Arabidopsis thaliana GN=HRD3A PE=1 SV=1
trembl
ID A0A067JT43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22718 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15278: 22142-28791
cDNA
(Sanger)
(ID:Location)		 028_J04.ab1: 28293-28774

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165928_040 0.0 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
2 Hb_000556_090 0.0995397702 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
3 Hb_000019_200 0.1013421496 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
4 Hb_000189_550 0.1015222862 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
5 Hb_011228_010 0.1016906405 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002055_040 0.1024582173 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
7 Hb_004108_160 0.1029974488 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
8 Hb_000352_190 0.1054710276 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
9 Hb_000099_160 0.1071620354 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
10 Hb_002099_080 0.1080790894 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
11 Hb_001341_070 0.108409194 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
12 Hb_004052_170 0.1106038091 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
13 Hb_001629_030 0.1128654031 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
14 Hb_007820_010 0.1147010765 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
15 Hb_000046_540 0.1156742768 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
16 Hb_000365_240 0.1168811741 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
17 Hb_000948_150 0.1185021409 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
18 Hb_000941_150 0.1186143813 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
19 Hb_000482_040 0.1192183277 - - Protein YME1, putative [Ricinus communis]
20 Hb_001347_060 0.1193147013 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_165928_040 Hb_165928_040 Hb_000556_090 Hb_000556_090 Hb_165928_040--Hb_000556_090 Hb_000019_200 Hb_000019_200 Hb_165928_040--Hb_000019_200 Hb_000189_550 Hb_000189_550 Hb_165928_040--Hb_000189_550 Hb_011228_010 Hb_011228_010 Hb_165928_040--Hb_011228_010 Hb_002055_040 Hb_002055_040 Hb_165928_040--Hb_002055_040 Hb_004108_160 Hb_004108_160 Hb_165928_040--Hb_004108_160 Hb_000556_090--Hb_004108_160 Hb_004052_170 Hb_004052_170 Hb_000556_090--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_000556_090--Hb_003153_010 Hb_000556_090--Hb_011228_010 Hb_001818_100 Hb_001818_100 Hb_000556_090--Hb_001818_100 Hb_000340_230 Hb_000340_230 Hb_000556_090--Hb_000340_230 Hb_002748_020 Hb_002748_020 Hb_000019_200--Hb_002748_020 Hb_001629_030 Hb_001629_030 Hb_000019_200--Hb_001629_030 Hb_000046_540 Hb_000046_540 Hb_000019_200--Hb_000046_540 Hb_000019_200--Hb_000189_550 Hb_006277_010 Hb_006277_010 Hb_000019_200--Hb_006277_010 Hb_001876_010 Hb_001876_010 Hb_000189_550--Hb_001876_010 Hb_002908_050 Hb_002908_050 Hb_000189_550--Hb_002908_050 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000011_060 Hb_000011_060 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_011228_010--Hb_002055_040 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090 Hb_004108_160--Hb_003153_010 Hb_004108_160--Hb_001629_030 Hb_004108_160--Hb_008959_010 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8839 15.1572 17.4365 24.8474 30.2017 16.7067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3278 15.7492 39.3817 28.0589 51.3665

CAGE analysis