Hb_000340_230

Information

Type -
Description -
Location Contig340: 218948-220327
Sequence    

Annotation

kegg
ID rcu:RCOM_0647910
description synapse-associated protein, putative
nr
ID XP_002524803.1
description synapse-associated protein, putative [Ricinus communis]
swissprot
ID A2BIJ3
description BSD domain-containing protein 1 OS=Danio rerio GN=bsdc1 PE=1 SV=1
trembl
ID B9SFN4
description Synapse-associated protein, putative OS=Ricinus communis GN=RCOM_0647910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35547: 218417-220396
cDNA
(Sanger)
(ID:Location)		 010_L10.ab1: 219733-220396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_230 0.0 - - synapse-associated protein, putative [Ricinus communis]
2 Hb_001163_100 0.0591778121 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_004052_170 0.0753048149 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
4 Hb_000913_020 0.077070248 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_029510_050 0.0780494134 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_002495_080 0.0781458831 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
7 Hb_005686_090 0.0786812452 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
8 Hb_000260_010 0.0801345609 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
9 Hb_005291_050 0.0817808962 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
10 Hb_000665_060 0.0821191393 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
11 Hb_000556_090 0.0822399274 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
12 Hb_000207_330 0.0843125284 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
13 Hb_005736_020 0.0855290905 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
14 Hb_029879_070 0.085614373 - - PREDICTED: phospholipase A I [Jatropha curcas]
15 Hb_001157_240 0.0857830796 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_004672_040 0.0867671591 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
17 Hb_000174_270 0.0885523697 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
18 Hb_027380_220 0.0886022664 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
19 Hb_000254_090 0.0886820564 - - PREDICTED: la protein 2 [Jatropha curcas]
20 Hb_004156_050 0.0893186265 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]

Gene co-expression network

sample Hb_000340_230 Hb_000340_230 Hb_001163_100 Hb_001163_100 Hb_000340_230--Hb_001163_100 Hb_004052_170 Hb_004052_170 Hb_000340_230--Hb_004052_170 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_029510_050 Hb_029510_050 Hb_000340_230--Hb_029510_050 Hb_002495_080 Hb_002495_080 Hb_000340_230--Hb_002495_080 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490 Hb_001818_100 Hb_001818_100 Hb_004052_170--Hb_001818_100 Hb_000556_090 Hb_000556_090 Hb_004052_170--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004052_170--Hb_001629_030 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_004052_170--Hb_029510_050 Hb_009780_030 Hb_009780_030 Hb_000913_020--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_000913_020--Hb_007508_060 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_000913_020--Hb_001163_100 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210 Hb_005650_010 Hb_005650_010 Hb_002495_080--Hb_005650_010 Hb_006658_020 Hb_006658_020 Hb_002495_080--Hb_006658_020 Hb_000441_090 Hb_000441_090 Hb_002495_080--Hb_000441_090 Hb_000258_070 Hb_000258_070 Hb_002495_080--Hb_000258_070 Hb_000049_020 Hb_000049_020 Hb_002495_080--Hb_000049_020 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_005686_090--Hb_002518_260 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0197 22.0373 13.6332 35.3323 24.4759 24.8936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2917 23.7855 35.8734 25.9326 42.4147

CAGE analysis