Hb_002988_040

Information

Type -
Description -
Location Contig2988: 22930-26228
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31247: 23221-25365 , PASA_asmbl_31248: 25381-26361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002988_040 0.0 - - -
2 Hb_000230_500 0.0787381688 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
3 Hb_000913_020 0.081033847 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_000497_300 0.0845201642 - - peroxisomal membrane protein [Hevea brasiliensis]
5 Hb_003020_220 0.0853217551 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
6 Hb_000041_100 0.0858700171 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_005686_090 0.0876224065 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
8 Hb_001405_070 0.0895287553 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
9 Hb_005736_020 0.0906522166 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
10 Hb_005116_050 0.0933765231 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000130_220 0.0938485975 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
12 Hb_000116_260 0.0939704972 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_009803_050 0.0975041954 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_005188_020 0.0976162443 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
15 Hb_004712_130 0.0984713718 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
16 Hb_000366_040 0.0996249829 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
17 Hb_000836_040 0.101188037 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_011671_410 0.1017470963 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
19 Hb_030565_030 0.1027671323 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
20 Hb_000417_200 0.1032249207 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002988_040 Hb_002988_040 Hb_000230_500 Hb_000230_500 Hb_002988_040--Hb_000230_500 Hb_000913_020 Hb_000913_020 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_003020_220 Hb_003020_220 Hb_002988_040--Hb_003020_220 Hb_000041_100 Hb_000041_100 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_009780_030 Hb_009780_030 Hb_000913_020--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_000913_020--Hb_007508_060 Hb_000913_020--Hb_000497_300 Hb_000340_230 Hb_000340_230 Hb_000913_020--Hb_000340_230 Hb_001163_100 Hb_001163_100 Hb_000913_020--Hb_001163_100 Hb_010344_050 Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1519 5.54458 2.94393 4.16807 2.87085 4.27703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48677 7.31217 7.72511 3.76474 8.30248

CAGE analysis