Hb_009780_030

Information

Type transcription factor
Description TF Family: GRAS
Location Contig9780: 21602-23452
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14540g
description hypothetical protein
nr
ID XP_006383329.1
description hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
swissprot
ID Q84TQ7
description DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1
trembl
ID U5GFQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14540g PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein gai-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64243: 21437-23634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_030 0.0 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
2 Hb_000913_020 0.0673983825 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_000768_200 0.0817746747 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
4 Hb_007508_060 0.0846383201 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
5 Hb_000207_330 0.0911088644 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
6 Hb_028697_010 0.0984036127 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
7 Hb_001163_100 0.098651614 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000340_230 0.0988049005 - - synapse-associated protein, putative [Ricinus communis]
9 Hb_002311_360 0.0998452706 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
10 Hb_032202_040 0.100404506 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
11 Hb_065525_040 0.1013107473 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_001314_080 0.1029363509 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
13 Hb_015934_120 0.1034394983 - - PREDICTED: callose synthase 7 [Vitis vinifera]
14 Hb_001818_100 0.1044866212 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_004672_040 0.1054190834 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
16 Hb_006478_020 0.1054556321 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_001226_140 0.1094140887 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
18 Hb_000116_260 0.1100149812 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
19 Hb_002046_160 0.1101136002 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000665_130 0.1106756049 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009780_030 Hb_009780_030 Hb_000913_020 Hb_000913_020 Hb_009780_030--Hb_000913_020 Hb_000768_200 Hb_000768_200 Hb_009780_030--Hb_000768_200 Hb_007508_060 Hb_007508_060 Hb_009780_030--Hb_007508_060 Hb_000207_330 Hb_000207_330 Hb_009780_030--Hb_000207_330 Hb_028697_010 Hb_028697_010 Hb_009780_030--Hb_028697_010 Hb_001163_100 Hb_001163_100 Hb_009780_030--Hb_001163_100 Hb_000913_020--Hb_007508_060 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_000340_230 Hb_000340_230 Hb_000913_020--Hb_000340_230 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_000913_020--Hb_001163_100 Hb_000768_200--Hb_000207_330 Hb_002046_160 Hb_002046_160 Hb_000768_200--Hb_002046_160 Hb_001818_100 Hb_001818_100 Hb_000768_200--Hb_001818_100 Hb_001766_050 Hb_001766_050 Hb_000768_200--Hb_001766_050 Hb_003025_100 Hb_003025_100 Hb_000768_200--Hb_003025_100 Hb_000665_130 Hb_000665_130 Hb_007508_060--Hb_000665_130 Hb_007508_060--Hb_001163_100 Hb_007508_060--Hb_000340_230 Hb_005686_090 Hb_005686_090 Hb_007508_060--Hb_005686_090 Hb_065525_040 Hb_065525_040 Hb_000207_330--Hb_065525_040 Hb_004672_040 Hb_004672_040 Hb_000207_330--Hb_004672_040 Hb_006478_020 Hb_006478_020 Hb_000207_330--Hb_006478_020 Hb_000665_060 Hb_000665_060 Hb_000207_330--Hb_000665_060 Hb_005054_110 Hb_005054_110 Hb_000207_330--Hb_005054_110 Hb_001252_130 Hb_001252_130 Hb_028697_010--Hb_001252_130 Hb_000261_020 Hb_000261_020 Hb_028697_010--Hb_000261_020 Hb_005496_140 Hb_005496_140 Hb_028697_010--Hb_005496_140 Hb_001902_030 Hb_001902_030 Hb_028697_010--Hb_001902_030 Hb_000375_350 Hb_000375_350 Hb_028697_010--Hb_000375_350 Hb_002235_250 Hb_002235_250 Hb_028697_010--Hb_002235_250 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_001163_100--Hb_000340_230 Hb_001163_100--Hb_004672_040 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1515 16.3105 10.2522 25.92 9.35414 14.1658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1154 19.105 24.0999 10.0883 29.9545

CAGE analysis