Hb_000768_200

Information

Type -
Description -
Location Contig768: 209209-210513
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06910g
description POPTRDRAFT_242137; hypothetical protein
nr
ID XP_002319749.2
description hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
swissprot
ID Q9LF61
description Xylulose 5-phosphate/phosphate translocator, chloroplastic OS=Arabidopsis thaliana GN=XPT PE=2 SV=1
trembl
ID B9I6G2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s06910g PE=4 SV=2
Gene Ontology
ID GO:0016021
description xylulose 5-phosphate phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_200 0.0 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
2 Hb_000207_330 0.0674270262 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
3 Hb_002046_160 0.0680319926 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001818_100 0.0728110325 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_009780_030 0.0817746747 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
6 Hb_001766_050 0.0849269619 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
7 Hb_003025_100 0.0865793185 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
8 Hb_006913_020 0.0876742676 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
9 Hb_028697_010 0.088254075 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
10 Hb_003153_010 0.0892692243 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
11 Hb_000805_100 0.0899959231 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000699_030 0.0913158593 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
13 Hb_005054_110 0.0913428133 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
14 Hb_001226_140 0.0924044301 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
15 Hb_003428_010 0.0927100677 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
16 Hb_008421_020 0.0933262629 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
17 Hb_001902_030 0.0933640539 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
18 Hb_004452_110 0.0934337997 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
19 Hb_065525_040 0.0936899621 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_006478_020 0.0943853806 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_200 Hb_000768_200 Hb_000207_330 Hb_000207_330 Hb_000768_200--Hb_000207_330 Hb_002046_160 Hb_002046_160 Hb_000768_200--Hb_002046_160 Hb_001818_100 Hb_001818_100 Hb_000768_200--Hb_001818_100 Hb_009780_030 Hb_009780_030 Hb_000768_200--Hb_009780_030 Hb_001766_050 Hb_001766_050 Hb_000768_200--Hb_001766_050 Hb_003025_100 Hb_003025_100 Hb_000768_200--Hb_003025_100 Hb_065525_040 Hb_065525_040 Hb_000207_330--Hb_065525_040 Hb_004672_040 Hb_004672_040 Hb_000207_330--Hb_004672_040 Hb_006478_020 Hb_006478_020 Hb_000207_330--Hb_006478_020 Hb_000665_060 Hb_000665_060 Hb_000207_330--Hb_000665_060 Hb_005054_110 Hb_005054_110 Hb_000207_330--Hb_005054_110 Hb_000300_270 Hb_000300_270 Hb_002046_160--Hb_000300_270 Hb_004452_110 Hb_004452_110 Hb_002046_160--Hb_004452_110 Hb_001712_060 Hb_001712_060 Hb_002046_160--Hb_001712_060 Hb_003581_200 Hb_003581_200 Hb_002046_160--Hb_003581_200 Hb_006658_020 Hb_006658_020 Hb_002046_160--Hb_006658_020 Hb_001629_030 Hb_001629_030 Hb_001818_100--Hb_001629_030 Hb_001818_100--Hb_003025_100 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_004108_160 Hb_004108_160 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000913_020 Hb_000913_020 Hb_009780_030--Hb_000913_020 Hb_007508_060 Hb_007508_060 Hb_009780_030--Hb_007508_060 Hb_009780_030--Hb_000207_330 Hb_028697_010 Hb_028697_010 Hb_009780_030--Hb_028697_010 Hb_001163_100 Hb_001163_100 Hb_009780_030--Hb_001163_100 Hb_001541_120 Hb_001541_120 Hb_001766_050--Hb_001541_120 Hb_008421_020 Hb_008421_020 Hb_001766_050--Hb_008421_020 Hb_000928_070 Hb_000928_070 Hb_001766_050--Hb_000928_070 Hb_000130_220 Hb_000130_220 Hb_001766_050--Hb_000130_220 Hb_062226_060 Hb_062226_060 Hb_001766_050--Hb_062226_060 Hb_001662_130 Hb_001662_130 Hb_001766_050--Hb_001662_130 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_012498_010 Hb_012498_010 Hb_003025_100--Hb_012498_010 Hb_091296_010 Hb_091296_010 Hb_003025_100--Hb_091296_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_003025_100--Hb_006478_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6531 10.3257 11.2283 14.7799 5.74906 11.7391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6137 13.1163 13.6527 9.4992 19.0979

CAGE analysis