Hb_002495_080

Information

Type -
Description -
Location Contig2495: 93297-98287
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05170g
description POPTRDRAFT_255709; glycoside hydrolase family 28 family protein
nr
ID XP_012073031.1
description PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
swissprot
ID P15922
description Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi GN=pehX PE=1 SV=1
trembl
ID A0A067KYL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06814 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase adpg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25938: 93810-98089 , PASA_asmbl_25941: 99182-103763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002495_080 0.0 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
2 Hb_005650_010 0.0748577922 - - ATP binding protein, putative [Ricinus communis]
3 Hb_006658_020 0.0774979722 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
4 Hb_000340_230 0.0781458831 - - synapse-associated protein, putative [Ricinus communis]
5 Hb_000441_090 0.0808253899 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
6 Hb_000258_070 0.081806084 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
7 Hb_000049_020 0.0821711751 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
8 Hb_000256_150 0.0827278248 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_005291_050 0.0830771114 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
10 Hb_009569_040 0.0858962695 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
11 Hb_002046_160 0.0867759629 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_010142_020 0.0888085406 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011063_050 0.0894080283 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
14 Hb_001016_050 0.0894916646 - - drought-inducible protein [Manihot esculenta]
15 Hb_000071_120 0.0903998771 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
16 Hb_000679_270 0.0904646953 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
17 Hb_010294_010 0.0906808239 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
18 Hb_001109_060 0.0908787302 - - amino acid transporter, putative [Ricinus communis]
19 Hb_000174_270 0.091433197 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
20 Hb_000086_440 0.0919341134 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002495_080 Hb_002495_080 Hb_005650_010 Hb_005650_010 Hb_002495_080--Hb_005650_010 Hb_006658_020 Hb_006658_020 Hb_002495_080--Hb_006658_020 Hb_000340_230 Hb_000340_230 Hb_002495_080--Hb_000340_230 Hb_000441_090 Hb_000441_090 Hb_002495_080--Hb_000441_090 Hb_000258_070 Hb_000258_070 Hb_002495_080--Hb_000258_070 Hb_000049_020 Hb_000049_020 Hb_002495_080--Hb_000049_020 Hb_003581_200 Hb_003581_200 Hb_005650_010--Hb_003581_200 Hb_004679_030 Hb_004679_030 Hb_005650_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_005650_010--Hb_002027_080 Hb_000046_500 Hb_000046_500 Hb_005650_010--Hb_000046_500 Hb_079526_040 Hb_079526_040 Hb_005650_010--Hb_079526_040 Hb_000359_210 Hb_000359_210 Hb_005650_010--Hb_000359_210 Hb_001016_050 Hb_001016_050 Hb_006658_020--Hb_001016_050 Hb_004452_110 Hb_004452_110 Hb_006658_020--Hb_004452_110 Hb_002046_160 Hb_002046_160 Hb_006658_020--Hb_002046_160 Hb_006658_020--Hb_000258_070 Hb_132840_110 Hb_132840_110 Hb_006658_020--Hb_132840_110 Hb_001163_100 Hb_001163_100 Hb_000340_230--Hb_001163_100 Hb_004052_170 Hb_004052_170 Hb_000340_230--Hb_004052_170 Hb_000913_020 Hb_000913_020 Hb_000340_230--Hb_000913_020 Hb_029510_050 Hb_029510_050 Hb_000340_230--Hb_029510_050 Hb_005686_090 Hb_005686_090 Hb_000340_230--Hb_005686_090 Hb_000441_090--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_000441_090--Hb_002027_080 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000340_530 Hb_000340_530 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000347_430 Hb_000347_430 Hb_000258_070--Hb_000347_430 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84073 6.59067 5.90788 12.9997 8.85081 6.65335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32041 5.65478 7.67446 7.0613 11.8752

CAGE analysis